Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00445 ATGACACCCCAGGAAGAACGCCTTGTGTTGGACCTTCATTCCAAATGGGGAAATAGGTGGTCAAGAATTGCACGCAAGTTGCCAGGGCGCACTGACAATGAGATCAAGAATTATTGGAGAACCCTGATGAGGAAAAAGGCTCAGGATGACAAGAAGAGAGGAGAAGCTGCATCACCAACTCCTTCAAGTGTTGATTCCTCGATATCCTCAAACAACCATGCAGTGGATCCACATGCTTCCAAGAAGGCAGGAGAAGAGAGCTTTTATGACACAGGAGGACATGGTAATGGTATGATCACAGGCTCAACCCAACAACAAGATGAGGGTCAAGGTCAAGGATTCTCTTTGGAAGATATATGGAAAGACATTGACATGTCAGAAGAGGGTTGCAACTTCTCTTGTCCACAAGTTCCTTCTCCATCATGGGAGTATTCTTCCGACTCTCTTTGGGTGGTGGATGAGGAAAGCTTGTTTTGCCCCTTGAGCGACCCATATTTTTCCTGCTATGCACAAGGCACTGTATTTTTAACCGGCTAA 537 0.46 MTPQEERLVLDLHSKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKAQDDKKRGEAASPTPSSVDSSISSNNHAVDPHASKKAGEESFYDTGGHGNGMITGSTQQQDEGQGQGFSLEDIWKDIDMSEEGCNFSCPQVPSPSWEYSSDSLWVVDEESLFCPLSDPYFSCYAQGTVFLTG 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00445 178 Gene3D - 2 73 - -
Cca10g00445 178 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 163 IPR044676 GO:0003700|GO:0006355|GO:0043565
Cca10g00445 178 SUPERFAMILY Homeodomain-like 2 50 IPR009057 -
Cca10g00445 178 MobiDBLite consensus disorder prediction 45 112 - -
Cca10g00445 178 CDD SANT 1 43 IPR001005 -
Cca10g00445 178 MobiDBLite consensus disorder prediction 96 112 - -
Cca10g00445 178 SMART sant 1 45 IPR001005 -
Cca10g00445 178 ProSiteProfiles Myb-like domain profile. 1 43 IPR001005 -
Cca10g00445 178 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 47 IPR017930 -
Cca10g00445 178 PANTHER TRANSCRIPTION FACTOR MYB48-LIKE ISOFORM X1 1 163 - -
Cca10g00445 178 Pfam Myb-like DNA-binding domain 2 42 IPR001005 -
Cca10g00445 178 MobiDBLite consensus disorder prediction 59 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00445 Cca-Chr10 4589236 4590762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00445 1 155 MYB Transcription Factor Family AT3G46130 49.425 4.40e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca10g00445 Myb_DNA-binding 7.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00445 K09422 - gmx:100775900 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00445 10 4589236 4590762 Cca10g00445 10 4589236 4590762 ECH
Cca04g00682 04 6686077 6687970 Cca10g00445 10 4589236 4590762 PCT