Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00441 ATGAAGAGAGGGAGAGAAGAGGGTGAGTTAGAGATGGCTAATTGTTTGATGCTATTAACCAAAGTTGGTGAGAGTGAAAGCAACCCATCAAAGGGTGGAGAGTTAGATAATATTGGTGGTTTTAAGTGCAAAACATGCAATAGAAGGTTCTCTTCATTTCAAGCCCTTGGTGGGCACAGAGCAAGCCACAAGAAACCGAAGCTAATGGTAACAGATCTTTCGTGCCATCATGAAAACCAAAGCATGAAACAACCTAGGATGCACCCGTGTCCCATTTGTGGGCTTCAGTTTGCTATTGGACAAGCTTTGGGAGGGCACATGAGAAAGCATAGAAGTGTTGTCAATGATGGTTTGGGGACTCGTAAAGCTTCGTTGTCCATCTTGAAGAAATCCAAGAATGCTGAAGGGATGAATTTGTGCTTGGACTTGAACTTGACGCCGTTGGAGAATGATCATCTTAAGCTCAACCTCAATTGTTTCATTTGA 486 0.43 MKRGREEGELEMANCLMLLTKVGESESNPSKGGELDNIGGFKCKTCNRRFSSFQALGGHRASHKKPKLMVTDLSCHHENQSMKQPRMHPCPICGLQFAIGQALGGHMRKHRSVVNDGLGTRKASLSILKKSKNAEGMNLCLDLNLTPLENDHLKLNLNCFI 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00441 161 Pfam C2H2-type zinc finger 41 66 - -
Cca10g00441 161 Pfam C2H2-type zinc finger 88 112 - -
Cca10g00441 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Cca10g00441 161 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 4 153 - -
Cca10g00441 161 SUPERFAMILY beta-beta-alpha zinc fingers 41 110 IPR036236 -
Cca10g00441 161 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Cca10g00441 161 PANTHER ZINC FINGER PROTEIN ZAT5 4 153 - -
Cca10g00441 161 SMART c2h2final6 88 110 IPR013087 -
Cca10g00441 161 SMART c2h2final6 41 63 IPR013087 -
Cca10g00441 161 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Cca10g00441 161 Gene3D Classic Zinc Finger 38 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00441 Cca-Chr10 4542449 4543331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00441 1 161 C2H2 Transcription Factor Family AT2G28710 47.929 1.16e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca10g00441 zf-C2H2_6 1.2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00441 - - gmx:100781211 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00441 10 4542449 4543331 Cca10g00441 10 4542449 4543331 ECH