Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00439 ATGAGAAGCAGCTTCCCTGGTGATAATAAGAGGAAAATTGTAGAATGGTTTGATGCTGGCAGTGTTAACATTGGAATCGGAAAGTCCGAGATGTCACATAGAATCGGGACAAAGCTCTTTGTGTGCAGATTATCCTTTTACACTACACAGGAGCAGCTCAAAACCTTGTTCTCTCCATTCGGGGTGGTTACCAAGGTTGATCTAGTCATGGATCCTAGAACTAAAAGGCCAAAAGGGTTTGGGTTTGTCTCCTACAAGTCTGAAATTGAAGCGGAAAATGCCATGAAAGCCATGAACGGCAGGATTGTTAATGGAAAGCTGATTTTGGTTGAACCTGCAAACGAGAAATGA 351 0.4274 MRSSFPGDNKRKIVEWFDAGSVNIGIGKSEMSHRIGTKLFVCRLSFYTTQEQLKTLFSPFGVVTKVDLVMDPRTKRPKGFGFVSYKSEIEAENAMKAMNGRIVNGKLILVEPANEK 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00439 116 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 36 111 - -
Cca10g00439 116 SUPERFAMILY RNA-binding domain, RBD 36 115 IPR035979 GO:0003676
Cca10g00439 116 Gene3D - 18 116 IPR012677 -
Cca10g00439 116 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN 36 111 - -
Cca10g00439 116 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 108 IPR000504 GO:0003723
Cca10g00439 116 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Cca10g00439 116 SMART rrm1_1 38 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00439 Cca-Chr10 4528287 4530482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00439 39 116 C2H2 Transcription Factor Family AT2G19380 38.462 1.08e-10 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00439 10 4528287 4530482 Cca10g00439 10 4528287 4530482 ECH