Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00433 atggagagtgaagctgcagaggtggagatgagaaggagaGGCCATTCAGTTTCGCGATGGAGCCCTACAAAAGAGCAAATAAGCACGTTGGAGAATCTGTACAAACAAGGAATAAGGACTCCTAATGCTAGCCAAATACAACATATTGTAACTAGGCTCAGTGCTTATGGTCACATTGAGGGAAAGAATGTGTTCTATTGGTTTCAGAATCACAAAGCGCGCCAAAGACAGAAACTAAAATTGAAGCAACAAAATGTTGGATCTTCCAATCACTTTCTTCATGCCTCCCAACCCATTTGTCAAAATGTGGTTTGCGGCCCATATTGTTTGCAACAGAGTGGAACCGGCTTTTATTCTCAACAACCACCAAAGGTTCTTGCAAGTGGAGTTAGCTCAAGCATTGTGACGTTTGGGTTGCAAAGAATGTGTGATGGCTCACAGAGAAATGAACTATTGCAACAAGATTACAACAGTAGGACCAGTAACCACAAGGCCTTAACTCTCTTTCCTCTTCATCCAACCAGCATTTTGGAAGAAAAATCTAGTCAAGTGCCATCCCTTGCTTCATTTTGTGAAGGTGCCATTGATACATCTTCTGCTGCTCATATTAATGAAGATGCTCATCCTGAAAACCTACCGTTCTTTGATTTTTTCACTTCGTCTCATGTGAGTGATTGA 678 0.3894 MESEAAEVEMRRRGHSVSRWSPTKEQISTLENLYKQGIRTPNASQIQHIVTRLSAYGHIEGKNVFYWFQNHKARQRQKLKLKQQNVGSSNHFLHASQPICQNVVCGPYCLQQSGTGFYSQQPPKVLASGVSSSIVTFGLQRMCDGSQRNELLQQDYNSRTSNHKALTLFPLHPTSILEEKSSQVPSLASFCEGAIDTSSAAHINEDAHPENLPFFDFFTSSHVSD 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00433 225 MobiDBLite consensus disorder prediction 1 19 - -
Cca10g00433 225 SUPERFAMILY Homeodomain-like 14 83 IPR009057 -
Cca10g00433 225 MobiDBLite consensus disorder prediction 1 20 - -
Cca10g00433 225 Pfam Homeodomain 18 77 IPR001356 GO:0003677
Cca10g00433 225 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 6 222 IPR044555 GO:0003700|GO:0099402
Cca10g00433 225 ProSiteProfiles 'Homeobox' domain profile. 13 78 IPR001356 GO:0003677
Cca10g00433 225 SMART HOX_1 15 82 IPR001356 GO:0003677
Cca10g00433 225 CDD homeodomain 19 78 IPR001356 GO:0003677
Cca10g00433 225 Gene3D - 9 78 - -
Cca10g00433 225 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 6 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00433 Cca-Chr10 4452898 4454284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00433 7 224 Wox Gene Family AT5G59340 37.354 5.86e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Cca10g00433 Homeodomain 2.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00433 - - ccaj:109805672 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00433 10 4452898 4454284 Cca10g00433 10 4452898 4454284 ECH