Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00431 ATGGTTTTCTCTTCTATTCCAGTCTATTTAGATCCTCCCAATTGGCAGCACCAACAACAACAAAATCAACACCAACAGCAGGCAAATGGCAGCAACAATCCTCAGCTGCTTCCGCAGCCACAGGCTCCTTCCATTGAAGCCGGTCCAATCAGGCCCGGTTCGATAGCGGATCGGACCAAAGTACCGGCTCAGGAAGGAGCCCTCAAGTGTCCACGGTGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCGCGCCACTTCTGCAAGACGTGTCGGCGTTATTGGACACGAGGTGGTGCTCTCAGGAACGTTCCCGTCGGTGGAGGATGCCGCAGGAACAAGAAGAACAAAAGGAGTCGCTCCAAATCTCCGGTTTCTACTCAGAAACCGTCGCTTCCCAATCCCCCAAGTGCAATACCTGAGCTAATAGGTCGATTCTCGCAACCTTTCGTGGCCTCTCTTCAGAATATTAACCGCTACG 502 0.5179 MVFSSIPVYLDPPNWQHQQQQNQHQQQANGSNNPQLLPQPQAPSIEAGPIRPGSIADRTKVPAQEGALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPVSTQKPSLPNPPSAIPELIGRFSQPFVASLQNINRY 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00431 167 ProSiteProfiles Zinc finger Dof-type profile. 68 122 IPR003851 GO:0003677|GO:0006355
Cca10g00431 167 Pfam Dof domain, zinc finger 67 122 IPR003851 GO:0003677|GO:0006355
Cca10g00431 167 ProSitePatterns Zinc finger Dof-type signature. 70 106 IPR003851 GO:0003677|GO:0006355
Cca10g00431 167 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 7 167 - -
Cca10g00431 167 MobiDBLite consensus disorder prediction 13 56 - -
Cca10g00431 167 MobiDBLite consensus disorder prediction 13 40 - -
Cca10g00431 167 MobiDBLite consensus disorder prediction 113 144 - -
Cca10g00431 167 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 167 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00431 Cca-Chr10 4429360 4430070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00431 1 124 C2C2-Dof Transcription Factor Family AT2G37590 54.483 1.05e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca10g00431 zf-Dof 8.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00431 - - gmx:100775899 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00431 10 4429360 4430070 Cca10g00431 10 4429360 4430070 ECH
Cca10g00431 10 4429360 4430070 Cca04g00651 04 6424626 6425976 PCT