LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca10g00421	ATGGAGCTTTTGAAGCCTCTGCACCCTCACCATGCACCCATTTTGCACCTTCCCTTTCACGCCCTCCCCTCTTCTTCTCAACAGCTTCCCCTCCCCATGCTTCCTAAGGTTCATGTTGCTGCTGGCAAATCGCTCCACAAAACCCTCCCTTTACTTCGCTGGACTTTAAACCACTTTCCGAACGCCGAAATCGTCATTCTTCATGCTTTTCAACCTTCTCTCACCATCCCCACTTTATTGGGGAAATTGCCAGCATCACAGGCTAGTCCTGAAGTGGTGTCCGCTTTTCGAAAAGTGGAAAGAGAACAGATTATGAAGCTTTTGGACAAGTACTTGACCATTTGCCAAGCAGCTAGGGTTAAGGCATGCATTATTGTAACCGAAGCTGACCAAGTCCAAAAAGGAATTGTTGATTTGGTTGTTAAGCATAATATTCAGAAGCTTGTCATTGGAGCGGTACCAGAAAATTGCATAAAAGTGAAAAGGAATTCTGGTAAAGCAAATTACACTGCCAAAAATGCTCCTCCGTTCTGTGAAGTATGGTTTATCTATAAAGGTAAACACATTTGGACAAGAGAGGCTTCTGAAGCACCATGTTCTTCACCTTCATTTACTCAACCTGAGATTACCACCACAGAAAGCTTGAGATGTAGATCTTTTCAATATGGTAAGAATGAATTATTCAACTCAGAGTATCTTCAACCAAGTTCGGTAAGAACTACTATTGGTTCTGGTTTTAGAAGTTTGGTTCAGGGGGAAATCATTGAAACCGAAGCCACTTTTTCATCCAAACCATCCAGTTGTAGCAGTCATTGTCATTGCTCCCCCCAAAATTCCTCTGGTGATTATTTACATACATATTTAGAGGACATGGAAGAAATGATTGACAAACAACTTAGGGAAACCAAAAAAGAAGCTGAGGCAGTAACAGATGAAGCCTTTGCAGGGCTATTAAAGTGCAAGAGGTTGGAAGTTGAAGCCATGGAAGCCATAAGGAAGGTCAATTTGTTTGAATCTGCCCATGCATGTGAAGTGAAGCTCAGAAAAGAAGCTGAGGATGTGCTTAGAGCTACAGTGCAAGAACATCAAAAGCTCTTGCATGCGAGTGAAGAAATTGCTGCTGAGCTACAAATGACCATGAGAAATATTGCCTTGCTAGATAGTCGTGCTCAGGAAGCAAACCGTAGGCGCGATGAAGCTTCAGATGAACTATCACTAATTCAAGAATCCATCTCAGCCCTATGGCAAGAAAGGCAGCAGATCAGGAGACAGAAAATGGAAGCCCTCCGCTGGCTTGAGCGGTGGAAAAGTCGTGGACAAGTTGGAGCAGCTCATTGCAATGGGGTCATTGGGTTTGCTGAAGAATTACCTGAGTTAGCAGAATTTTCATTATCAGATCTTCAAAATGCCACGTGTAATTTTTCCAATAGCTTTAAAATTGGTCAAGGTGGATATGGTTGTATATATAAGGGGGAAATGTTGGGTAGGACTGTTGCTATAAAAAAGTTCCATCAACATAACATGCAAGGACCACTGGAGTTTCATCAAGAGGTTCAAGTTCTCGGTAGTCTCCAGCACCCTCATTTGATCACTTTGCTTGGTTTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTACCTCCCCAATGGAACACTTCAAGACTACCTATTCCGAAAAAGCAACAATTCCCCGTTGACATGGAATACCCGAGCACGAATGGTTGCTGAAATTGCTAGTGCACTCTGTTTCCTACATTCTTGTAAACCTGAAGCTATTGTCCATGGTGATCTGAAGCCAGAGACTGTGCTACTTGATTCTTCACTTGGTTGCAAGATGTGTGGATTTGGGTTCTGCAGGCTGGTGAGTGAGGAATCTCTCCTCCGTCCTAGTTTCCGCTTGAGCACTGAACCAAAGGGTGCTTTCACATATATGGATCCAGAGTTTCAGAGAACTGGAATACTAACAACCAAGTCTGACATCTACTCCTTCGGTCTCATCATTTTACAATTGCTCACTGGTAGGAATCCAATTGGATTAGCAATTTTAGTACGTAATGCAGCTTCATGTGGAAAATTGTCTTCAATTCTGGATTCTTCAGCTGGAGAATGGCCCTCAGCTGTGGCAATGCGATTGGTTGAACTGGGATTGCAATGCTGTCAACAAAATCGGAGAGACAGACCCGAGTTAACCCCTACACTAGTGAAAGAATTGGAGCAGTTGCATGCTTCAGAAGAGCGACCAGTTCCATCTTTTTTCTTATGTCCAATCCTTCAGGAAATAATGCACGATCCCCAAGTTGCGGCAGACGGATTTACCTATGAAGGGGATGCCATACGTGAATGGTTGGAAAATGGACATGTTACTTCTCCAATGACTAATTTGAAATTGAGTCACCTGTTTCTTACTCCCAATCACGCACTTCGACTTGCCATCCAAGATTGGCTTTGCAAATCTTAA	2457	0.4314	MELLKPLHPHHAPILHLPFHALPSSSQQLPLPMLPKVHVAAGKSLHKTLPLLRWTLNHFPNAEIVILHAFQPSLTIPTLLGKLPASQASPEVVSAFRKVEREQIMKLLDKYLTICQAARVKACIIVTEADQVQKGIVDLVVKHNIQKLVIGAVPENCIKVKRNSGKANYTAKNAPPFCEVWFIYKGKHIWTREASEAPCSSPSFTQPEITTTESLRCRSFQYGKNELFNSEYLQPSSVRTTIGSGFRSLVQGEIIETEATFSSKPSSCSSHCHCSPQNSSGDYLHTYLEDMEEMIDKQLRETKKEAEAVTDEAFAGLLKCKRLEVEAMEAIRKVNLFESAHACEVKLRKEAEDVLRATVQEHQKLLHASEEIAAELQMTMRNIALLDSRAQEANRRRDEASDELSLIQESISALWQERQQIRRQKMEALRWLERWKSRGQVGAAHCNGVIGFAEELPELAEFSLSDLQNATCNFSNSFKIGQGGYGCIYKGEMLGRTVAIKKFHQHNMQGPLEFHQEVQVLGSLQHPHLITLLGFCPEAWSIVYEYLPNGTLQDYLFRKSNNSPLTWNTRARMVAEIASALCFLHSCKPEAIVHGDLKPETVLLDSSLGCKMCGFGFCRLVSEESLLRPSFRLSTEPKGAFTYMDPEFQRTGILTTKSDIYSFGLIILQLLTGRNPIGLAILVRNAASCGKLSSILDSSAGEWPSAVAMRLVELGLQCCQQNRRDRPELTPTLVKELEQLHASEERPVPSFFLCPILQEIMHDPQVAADGFTYEGDAIREWLENGHVTSPMTNLKLSHLFLTPNHALRLAIQDWLCKS	818

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca10g00421	818	SUPERFAMILY	RING/U-box	742	817	-	-
Cca10g00421	818	Coils	Coil	288	312	-	-
Cca10g00421	818	ProSiteProfiles	U-box domain profile.	747	818	IPR003613	GO:0004842\|GO:0016567
Cca10g00421	818	CDD	RING-Ubox_WDSUB1_like	752	793	-	-
Cca10g00421	818	PANTHER	OS10G0100500 PROTEIN	24	817	-	-
Cca10g00421	818	Gene3D	Phosphorylase Kinase; domain 1	451	546	-	-
Cca10g00421	818	Pfam	U-box domain	748	817	IPR003613	GO:0004842\|GO:0016567
Cca10g00421	818	Pfam	Protein tyrosine and serine/threonine kinase	479	730	IPR001245	GO:0004672\|GO:0006468
Cca10g00421	818	CDD	STK_N	36	186	-	-
Cca10g00421	818	ProSiteProfiles	Protein kinase domain profile.	474	740	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Showing 1 to 10 of 19 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca10g00421	Cca-Chr10	4339149	4343989	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca10g00421	36	815	U-box Gene Family	AT2G45910	37.097	5.05e-169	508

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Cca10g00421		PK_Tyr_Ser-Thr	9.8e-37	CL0016

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca10g00421	-		-	gmx:100788846	1425.22

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca10g00421	10	4339149	4343989	Cca10g00421	10	4339149	4343989	ECH
	Cca10g00421	10	4339149	4343989	Cca04g00643	04	6338712	6345096	PCT

Showing 1 to 2 of 2 entries

Previous1Next