Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00421 ATGGAGCTTTTGAAGCCTCTGCACCCTCACCATGCACCCATTTTGCACCTTCCCTTTCACGCCCTCCCCTCTTCTTCTCAACAGCTTCCCCTCCCCATGCTTCCTAAGGTTCATGTTGCTGCTGGCAAATCGCTCCACAAAACCCTCCCTTTACTTCGCTGGACTTTAAACCACTTTCCGAACGCCGAAATCGTCATTCTTCATGCTTTTCAACCTTCTCTCACCATCCCCACTTTATTGGGGAAATTGCCAGCATCACAGGCTAGTCCTGAAGTGGTGTCCGCTTTTCGAAAAGTGGAAAGAGAACAGATTATGAAGCTTTTGGACAAGTACTTGACCATTTGCCAAGCAGCTAGGGTTAAGGCATGCATTATTGTAACCGAAGCTGACCAAGTCCAAAAAGGAATTGTTGATTTGGTTGTTAAGCATAATATTCAGAAGCTTGTCATTGGAGCGGTACCAGAAAATTGCATAAAAGTGAAAAGGAATTCTGGTAAAGCAAATTACACTGCCAAAAATGCTCCTCCGTTCTGTGAAGTATGGTTTATCTATAAAGGTAAACACATTTGGACAAGAGAGGCTTCTGAAGCACCATGTTCTTCACCTTCATTTACTCAACCTGAGATTACCACCACAGAAAGCTTGAGATGTAGATCTTTTCAATATGGTAAGAATGAATTATTCAACTCAGAGTATCTTCAACCAAGTTCGGTAAGAACTACTATTGGTTCTGGTTTTAGAAGTTTGGTTCAGGGGGAAATCATTGAAACCGAAGCCACTTTTTCATCCAAACCATCCAGTTGTAGCAGTCATTGTCATTGCTCCCCCCAAAATTCCTCTGGTGATTATTTACATACATATTTAGAGGACATGGAAGAAATGATTGACAAACAACTTAGGGAAACCAAAAAAGAAGCTGAGGCAGTAACAGATGAAGCCTTTGCAGGGCTATTAAAGTGCAAGAGGTTGGAAGTTGAAGCCATGGAAGCCATAAGGAAGGTCAATTTGTTTGAATCTGCCCATGCATGTGAAGTGAAGCTCAGAAAAGAAGCTGAGGATGTGCTTAGAGCTACAGTGCAAGAACATCAAAAGCTCTTGCATGCGAGTGAAGAAATTGCTGCTGAGCTACAAATGACCATGAGAAATATTGCCTTGCTAGATAGTCGTGCTCAGGAAGCAAACCGTAGGCGCGATGAAGCTTCAGATGAACTATCACTAATTCAAGAATCCATCTCAGCCCTATGGCAAGAAAGGCAGCAGATCAGGAGACAGAAAATGGAAGCCCTCCGCTGGCTTGAGCGGTGGAAAAGTCGTGGACAAGTTGGAGCAGCTCATTGCAATGGGGTCATTGGGTTTGCTGAAGAATTACCTGAGTTAGCAGAATTTTCATTATCAGATCTTCAAAATGCCACGTGTAATTTTTCCAATAGCTTTAAAATTGGTCAAGGTGGATATGGTTGTATATATAAGGGGGAAATGTTGGGTAGGACTGTTGCTATAAAAAAGTTCCATCAACATAACATGCAAGGACCACTGGAGTTTCATCAAGAGGTTCAAGTTCTCGGTAGTCTCCAGCACCCTCATTTGATCACTTTGCTTGGTTTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTACCTCCCCAATGGAACACTTCAAGACTACCTATTCCGAAAAAGCAACAATTCCCCGTTGACATGGAATACCCGAGCACGAATGGTTGCTGAAATTGCTAGTGCACTCTGTTTCCTACATTCTTGTAAACCTGAAGCTATTGTCCATGGTGATCTGAAGCCAGAGACTGTGCTACTTGATTCTTCACTTGGTTGCAAGATGTGTGGATTTGGGTTCTGCAGGCTGGTGAGTGAGGAATCTCTCCTCCGTCCTAGTTTCCGCTTGAGCACTGAACCAAAGGGTGCTTTCACATATATGGATCCAGAGTTTCAGAGAACTGGAATACTAACAACCAAGTCTGACATCTACTCCTTCGGTCTCATCATTTTACAATTGCTCACTGGTAGGAATCCAATTGGATTAGCAATTTTAGTACGTAATGCAGCTTCATGTGGAAAATTGTCTTCAATTCTGGATTCTTCAGCTGGAGAATGGCCCTCAGCTGTGGCAATGCGATTGGTTGAACTGGGATTGCAATGCTGTCAACAAAATCGGAGAGACAGACCCGAGTTAACCCCTACACTAGTGAAAGAATTGGAGCAGTTGCATGCTTCAGAAGAGCGACCAGTTCCATCTTTTTTCTTATGTCCAATCCTTCAGGAAATAATGCACGATCCCCAAGTTGCGGCAGACGGATTTACCTATGAAGGGGATGCCATACGTGAATGGTTGGAAAATGGACATGTTACTTCTCCAATGACTAATTTGAAATTGAGTCACCTGTTTCTTACTCCCAATCACGCACTTCGACTTGCCATCCAAGATTGGCTTTGCAAATCTTAA 2457 0.4314 MELLKPLHPHHAPILHLPFHALPSSSQQLPLPMLPKVHVAAGKSLHKTLPLLRWTLNHFPNAEIVILHAFQPSLTIPTLLGKLPASQASPEVVSAFRKVEREQIMKLLDKYLTICQAARVKACIIVTEADQVQKGIVDLVVKHNIQKLVIGAVPENCIKVKRNSGKANYTAKNAPPFCEVWFIYKGKHIWTREASEAPCSSPSFTQPEITTTESLRCRSFQYGKNELFNSEYLQPSSVRTTIGSGFRSLVQGEIIETEATFSSKPSSCSSHCHCSPQNSSGDYLHTYLEDMEEMIDKQLRETKKEAEAVTDEAFAGLLKCKRLEVEAMEAIRKVNLFESAHACEVKLRKEAEDVLRATVQEHQKLLHASEEIAAELQMTMRNIALLDSRAQEANRRRDEASDELSLIQESISALWQERQQIRRQKMEALRWLERWKSRGQVGAAHCNGVIGFAEELPELAEFSLSDLQNATCNFSNSFKIGQGGYGCIYKGEMLGRTVAIKKFHQHNMQGPLEFHQEVQVLGSLQHPHLITLLGFCPEAWSIVYEYLPNGTLQDYLFRKSNNSPLTWNTRARMVAEIASALCFLHSCKPEAIVHGDLKPETVLLDSSLGCKMCGFGFCRLVSEESLLRPSFRLSTEPKGAFTYMDPEFQRTGILTTKSDIYSFGLIILQLLTGRNPIGLAILVRNAASCGKLSSILDSSAGEWPSAVAMRLVELGLQCCQQNRRDRPELTPTLVKELEQLHASEERPVPSFFLCPILQEIMHDPQVAADGFTYEGDAIREWLENGHVTSPMTNLKLSHLFLTPNHALRLAIQDWLCKS 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00421 818 SUPERFAMILY RING/U-box 742 817 - -
Cca10g00421 818 Coils Coil 288 312 - -
Cca10g00421 818 ProSiteProfiles U-box domain profile. 747 818 IPR003613 GO:0004842|GO:0016567
Cca10g00421 818 CDD RING-Ubox_WDSUB1_like 752 793 - -
Cca10g00421 818 PANTHER OS10G0100500 PROTEIN 24 817 - -
Cca10g00421 818 Gene3D Phosphorylase Kinase; domain 1 451 546 - -
Cca10g00421 818 Pfam U-box domain 748 817 IPR003613 GO:0004842|GO:0016567
Cca10g00421 818 Pfam Protein tyrosine and serine/threonine kinase 479 730 IPR001245 GO:0004672|GO:0006468
Cca10g00421 818 CDD STK_N 36 186 - -
Cca10g00421 818 ProSiteProfiles Protein kinase domain profile. 474 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00421 818 Coils Coil 376 410 - -
Cca10g00421 818 Gene3D HUPs 36 153 IPR014729 -
Cca10g00421 818 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 52 155 - -
Cca10g00421 818 SUPERFAMILY Protein kinase-like (PK-like) 458 732 IPR011009 -
Cca10g00421 818 SMART Ubox_2 751 814 IPR003613 GO:0004842|GO:0016567
Cca10g00421 818 ProSitePatterns Protein kinases ATP-binding region signature. 480 502 IPR017441 GO:0005524
Cca10g00421 818 Gene3D Transferase(Phosphotransferase) domain 1 547 748 - -
Cca10g00421 818 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 749 818 IPR013083 -
Cca10g00421 818 PANTHER OS02G0152300 PROTEIN 24 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00421 Cca-Chr10 4339149 4343989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00421 36 815 U-box Gene Family AT2G45910 37.097 5.05e-169 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Cca10g00421 PK_Tyr_Ser-Thr 9.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00421 - - gmx:100788846 1425.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00421 10 4339149 4343989 Cca10g00421 10 4339149 4343989 ECH
Cca10g00421 10 4339149 4343989 Cca04g00643 04 6338712 6345096 PCT