Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00419 ATGGGAAAGGACTTGATTTCTTCCGACCAAACTGTTCAAATTCAGGACAATAATCCAGGATGCATGTGGGGCATGCTTCAAATTCTTGATTATCATCGTTGGCGCGTAAAAAAGGTGTTTCCTAACAAAAGGAGAAGACATGCCACATATAAGAGAAAAGCCATTTTGTATAACCAACATGTAGACCAACAACATGGAGTAACAGAAACAGAACACCTCCTGCTCGGACAACATAGCGAAAAATTGCGTTTTGCTGGCAAAAGTTCTTCCAAAAATCGCAAAAAGGAATCACACACTCAGAAAAAGTTTAACAACGAAAATTATGAAGGCAGTGGTACCATGGACTACTCAAGGAAAAACAAGGCCATTAGTGAGTATGCACTTCATGTGGAGAAAGATTGCAAGACAAGACAAGCTTCCCTTAACCATAAGCCTATGGAAACAAACAAGCATAACAAAGACATTTCCAACAAATTTGAGAAACATGCTGATGTTTTGGAGTTATTTAGAGTGGAGAAGGATTTATTACTCAAATTTCTACGAGACATAGACTTTGGTGGGAAAAAACTCCATCACAACAAAGCAAGATTGACAAAATCTGGGTCATTTCCTTTAGCCTCAACTTCACAGATGAAAAACATTAGCTCTAGGTCCTTAAAACACAAGCAAAACGAAATTTGGGCCTTTCCGAAGGGAGAAAAGTTGGCCGCTGGTACTCAAGCATCAAACATGTTAGTGTCCAATTTTGTGAAAGATATTTCTTATGAGAAGCCAATGCCTTTAGTGAGTGATATTGGTGCGGATAGTGGCACGAAACAAAAACCAATAATTTCCTCAAGGTCTTCTCAAGGATCAAATCACAAAGGGTGGAATCAGTTGGTTCTTCATCAATTCAAAGTTATAAAACAGAAGATAAAGCATGCTCTTGTGGAATTCAGAAAAAGTAGTTACCAAACTTCTGCCGAAGCAATCCGCCGCAGAGCTTCGCCTGAATATAGCATCATCAATAACGAGGAAGAGATCTCACAAAGCTTAGATCATGGCGTGGTTCAAAAATACAAAATGAATAAAATCTCAAATGAAACTAAAGCTTCTGATCATGATTCCAACAAGCATGATGCTCGCCTTATACGAAGAACATCCTCTCTAAATTTATCGTTGGATAGATATACTGAGTTGTTTGAGAAAAGCTTCAGCAGAGACCCCAAGTGGCAAAACTCAAAGTCTAAAAGCTTGAAATTGAGAAACGAGGATAAGATCCACAAGAGTGGCAATGTTCCTAAGTTTTCTAGAAGCAATTTATCTATGCCTAGTCTCGAGACTCTAGGCTTCATTCTTCAAGACGCACTTTTTGATACAAATGATATAACAGTGGAAACTCATAAACAAGCTCATAGAAAATCAGTGAGTCTTCCTTTGAAGATAGACAAGTCATTTGATCGTTTCAAAGAGGCTGAAATTGTGGAAACAGTAGAAGGGAGTGGCAGAGATGCATATCCCAGTATTTTATCTGATAAGATTATGGAGAAAATTGATGAAGTAGTTACCAGTGACCAAAAGGAGGACATGCATGAGCCAGCAGCGGGAGATGAAAGTTTTCCCCAAGAAAAAGAGGAAATGAGTAATATGACTACCTATCTTGACAAGGAGGTAATGGCCTCTCTTGAAACTAGCTATGAGGACAATATAACCAGCCATGCAGAAGGTACACAATTGAAAACCTTAGGCTCTACGTTGGACGAAGTGGAGACTGGTTTGTCATATAAAGGAAGTGCTAGTGTAACAGCTGAAGTCACAGACAACTCTTCCAATTTCAAATATGTGAAAAATGTTCTTGAATTTTCCGGCTACTTGGGAAACGAGGACATTATGAGATACACAGTAGACCAGCCACTAAAGCCCTCCTTATTCAAAGATTTGGATGCAACTTTGGTCCATGAAATTGAACCATCTGAAGAAGAGACAATCAACCCTTATGATCACCAGCTCCTCTTTAACTTGGTTAACGAGGTGCTGCTTGAAATATATGGCAGATCACCAACTTACTTCCCAAGACCATTCTCTTTCAACCCTCGCCTCCATCCAATGCCTAAAGGGCACTACCTTATGAATGAAGTATGGAATAGTGTTAATTCATACCTGATCTTGAGACCTGAGCTAGACCAAACATTAGAGGATGTTGTGGGTCGTGATTTGGCAAAAAGTGACTGGATGATCCGTCAAGAGGAAGAGGAGTATGTAGCGCTTGAACTAGAGGAGATGATCATGGAAGATTTGTTAGATGAATTTATCTTCTCATGA 2301 0.3933 MGKDLISSDQTVQIQDNNPGCMWGMLQILDYHRWRVKKVFPNKRRRHATYKRKAILYNQHVDQQHGVTETEHLLLGQHSEKLRFAGKSSSKNRKKESHTQKKFNNENYEGSGTMDYSRKNKAISEYALHVEKDCKTRQASLNHKPMETNKHNKDISNKFEKHADVLELFRVEKDLLLKFLRDIDFGGKKLHHNKARLTKSGSFPLASTSQMKNISSRSLKHKQNEIWAFPKGEKLAAGTQASNMLVSNFVKDISYEKPMPLVSDIGADSGTKQKPIISSRSSQGSNHKGWNQLVLHQFKVIKQKIKHALVEFRKSSYQTSAEAIRRRASPEYSIINNEEEISQSLDHGVVQKYKMNKISNETKASDHDSNKHDARLIRRTSSLNLSLDRYTELFEKSFSRDPKWQNSKSKSLKLRNEDKIHKSGNVPKFSRSNLSMPSLETLGFILQDALFDTNDITVETHKQAHRKSVSLPLKIDKSFDRFKEAEIVETVEGSGRDAYPSILSDKIMEKIDEVVTSDQKEDMHEPAAGDESFPQEKEEMSNMTTYLDKEVMASLETSYEDNITSHAEGTQLKTLGSTLDEVETGLSYKGSASVTAEVTDNSSNFKYVKNVLEFSGYLGNEDIMRYTVDQPLKPSLFKDLDATLVHEIEPSEEETINPYDHQLLFNLVNEVLLEIYGRSPTYFPRPFSFNPRLHPMPKGHYLMNEVWNSVNSYLILRPELDQTLEDVVGRDLAKSDWMIRQEEEEYVALELEEMIMEDLLDEFIFS 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00419 766 MobiDBLite consensus disorder prediction 517 537 - -
Cca10g00419 766 MobiDBLite consensus disorder prediction 82 103 - -
Cca10g00419 766 PANTHER PROTEIN TRM32 1 766 - -
Cca10g00419 766 Coils Coil 739 759 - -
Cca10g00419 766 MobiDBLite consensus disorder prediction 82 115 - -
Cca10g00419 766 Pfam Domain of unknown function (DUF4378) 605 762 IPR025486 -
Cca10g00419 766 PANTHER PROTEIN TRM32 1 766 IPR044257 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00419 Cca-Chr10 4323594 4328536 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00419 164 756 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 26.786 7.57e-39 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00419 - - gmx:100784103 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00419 10 4323594 4328536 Cca10g00419 10 4323594 4328536 ECH