LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca10g00414	ATGATTGCCCCTTTGGCGTTTGTTGTGGGGCTTAGTATGGCAAAGGAGGCATTGGAGGATTCGCGCCGGTTCCTTCAGGATGTTAAGGTTAATCGCAGGAAAGTTAGTTTCCACAAAGGTGATGGCGAATTTGGTCTCAGGTCGTGGCAGAATATTATGGTTGGGGATGTGGTAAAAGTAGAAAAGGACCAGTTTTTTCCCGCTGACTTGCTTCTGTTGGCGTCAAGTTATGAGGATGGGATATGCTATGTGGAGACAATGAATTTAGATGGGGAGACCAACTTGAAGGTGAAGAGATCATTGGAGGCTACCTTGTCTCTGGATAATGATGGAGCTTTTAAGGATTTCTCTGGAACAATATATTGTGAAGATCCAAATCCCAGTCTTTACACTTTTATTGGGAACTTTGAGTACGAACAACAGGTTTATCCTCTTGATCCTAGTCAAATACTCCTCCGAGATTCAAAGCTCAGGAACACGGATCATGTCTATGGAGTGGTCATTTTCACTGGACATGACAGCAAAGTTATGCAGAATTCTACAAAATCCCCTTCAAAAAGAAGCACAATTGAGAAAAAGATGGATTATATCATATACACTCTTTTCACTGTTCTTATATTGATATCTTTTATTAGTTCAATAGGATTTGTTACAAAGACCAAATACGAAACCCCAAAGTGGTGGTATTTACGGCCTGACAATATTGAATACCAGTATGATCCTGGTAAAATTGGATTGGCTGGGATGAGCCATCTGATTACTGCACTCATTCTTTACGGATATTTGATACCCATTTCGCTTTATGTTTCAATTGAGGTTGTGAAGGTATTACAGGCAACCTTCATTAACCAAGACATTCAAATGTATGATGATGAAACTGGGACTCCAGCTGATGCACGAACATCAAATTTGAATGAAGAGTTGGGCCAGGTAGACACTATCCTCTCTGATAAAACTGGCACTTTAACTTGCAACCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTGCATATGGTGTTCGCTCCAGTGAAGTTGAAGTTGCTGCAGCGAAGCAGATGGCTTCTGATCTTGAGGAGCAGGACGAGGAGTTCTCTAGTTTCCCCATGTGTAAGGAGAGAAAAGTGTCATGGGAAAACACCACAGTAGATGAAGAAATTGAACTGGGGACTGTTGTTCCTTCCAAAAATGATGAAGATCAAAGGCCTGCCATAAAGGGATTTGGGTTTGAAGATGATCGCCTTATGAATGGTAACTGGTTGAAAGAACCCGACACCAATGTCCTTTTGTTGTTTTTCCGGATATTAGCAGTTTGCCATACTGCCATTCCTGAACTGAATGAGGAGACCGACAGTTGTACATATGAAGCCGAATCACCCGATGAAGGGGCTTTTCTAGTAGCAGCTAGAGAATTTGGTTTTGAATTTTATAGGAGAACTCAATCAAGTGTCATCATTCGTGAAAGATTTTCTGCTTCAGGACAAGTGGTTCAAAGAGAATATAAAATTTTGAATCTGCTGGATTTTACTAGCAAAAGAAAGCGCATGTCAGTGATTGTGCGTGACGAGGATGGAAGCATTATTCTTTTCTGCAAAGGAGCCGACAGTATCATATTTGATCGACTGTCTAAGAATGGAAAAATGTATTTAGAGGCTACAACTAGACATTTGAATGAATATGGAGAAGCAGGTTTGAGAACACTTGCCCTGGCTTACAGAAAGCTTGATGAACAAGAGTACTTTGATTGGAATAACAAGTTTCAGAAGGCCAAGACAGCTGTTGGGCCTGACAGAGATGCAATGCTTGAGCATGTTTCAGATATTATGGAAAGAGAGTTGATTCTTGTTGGAGCTACCGCTGTTGAAGATAAACTACAGAAAGGGGTAGGTTGA	1893	0.4105	MIAPLAFVVGLSMAKEALEDSRRFLQDVKVNRRKVSFHKGDGEFGLRSWQNIMVGDVVKVEKDQFFPADLLLLASSYEDGICYVETMNLDGETNLKVKRSLEATLSLDNDGAFKDFSGTIYCEDPNPSLYTFIGNFEYEQQVYPLDPSQILLRDSKLRNTDHVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISFISSIGFVTKTKYETPKWWYLRPDNIEYQYDPGKIGLAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFINQDIQMYDDETGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSEVEVAAAKQMASDLEEQDEEFSSFPMCKERKVSWENTTVDEEIELGTVVPSKNDEDQRPAIKGFGFEDDRLMNGNWLKEPDTNVLLLFFRILAVCHTAIPELNEETDSCTYEAESPDEGAFLVAAREFGFEFYRRTQSSVIIRERFSASGQVVQREYKILNLLDFTSKRKRMSVIVRDEDGSIILFCKGADSIIFDRLSKNGKMYLEATTRHLNEYGEAGLRTLALAYRKLDEQEYFDWNNKFQKAKTAVGPDRDAMLEHVSDIMERELILVGATAVEDKLQKGVG	630

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca10g00414	630	TIGRFAM	ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase	2	629	IPR006539	GO:0000287\|GO:0005524\|GO:0015914\|GO:0016021\|GO:0140326
	Cca10g00414	630	Gene3D	-	391	623	IPR023299	GO:0000166
	Cca10g00414	630	Gene3D	-	325	353	IPR023299	GO:0000166
	Cca10g00414	630	Gene3D	-	312	324	IPR023214	-
	Cca10g00414	630	Gene3D	-	7	181	-	-
	Cca10g00414	630	SUPERFAMILY	Calcium ATPase, transmembrane domain M	3	309	IPR023298	-
	Cca10g00414	630	SUPERFAMILY	HAD-like	303	344	IPR036412	-
	Cca10g00414	630	SUPERFAMILY	Calcium ATPase, transduction domain A	40	179	IPR008250	-
	Cca10g00414	630	Pfam	Cation transport ATPase (P-type)	438	543	-	-
	Cca10g00414	630	CDD	P-type_ATPase_APLT_Dnf-like	2	629	-	-
	Cca10g00414	630	ProSitePatterns	E1-E2 ATPases phosphorylation site.	317	323	IPR018303	-
	Cca10g00414	630	Coils	Coil	341	361	-	-
	Cca10g00414	630	PANTHER	PHOSPHOLIPID-TRANSPORTING ATPASE	1	629	-	-
	Cca10g00414	630	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	415	578	IPR023299	GO:0000166
	Cca10g00414	630	PANTHER	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	1	629	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca10g00414	Cca-Chr10	4300674	4303011	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca10g00414	1	629	Primary Pumps ATPases	AT1G54280	73.618	0.0	960

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca10g00414	K01530		-	gmx:100778710	1134.4