Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00413 ATGGGTAAGCATGATCACGTGCACATTCACGAAAATGGTCCAACGAGATTGCAAGTTGGATATCATGGTGCTCGCCCTTTGGATGCAACCCTCTCTCAAAATTCAAAGGCCAGATCCACATTTTCCGTTTACCTCCCTACGATAGATAGAATTCAGAGACAAGTGGTTCAAAGAGAATATAAAATTTTGAATCTGCTGGATTTTACTAGCAAAAGAAAGCGCATGTCAGTGATTGTGCGTGACGAGGATGGAAGCATTATTCTTTTCTGCAAAGGAGCCGACAGTATCATATTTGATCGACTGTCTAAGAATGGAAAAATGTATTTAGAGGCTACAACTAGACATTTGAATGAATATGGAGAAGCAGGTTTGAGAACACTTGCCCTGGCTTACAGAAAGCTTGATGAACAAGAGTACTTTGATTGGAATAACAAGTTTCAGAAGGCCAAGACAGCTGTTGGGCCTGACAGAGATGCAATGCTTGAGCATGTTTCAGATATTATGGAAAGAGAGTTGATTCTTGTTGGAGCTACCGCTGTTGAAGATAAACTACAGAAAGGGGTGCCTCAATGCATTGATAAACTTGCTCaagctggtctaaagctctgggtattgactggtgataagatggaaactgcaatcaacattggTTTCGCTTGTAGTTTGCTTCGACAGGGCATGAAGCAAATCTGTATCACAACGAATTCAGATCCAGCAATTAATGATGGGAAAGAGGTCATTAAAGGCAGCATCTTGAATCAAATCACCAATGCCACACAACTGATAAAGCTGGAAAAAGATCCACATGCAGCGTTTGCACTAATTATTGATGGGAAAACTCTAACATATGCCTTAGAAGATGATGTCAAGCACCAATTTTTGGGATTGacccaatgttga 900 0.3733 MGKHDHVHIHENGPTRLQVGYHGARPLDATLSQNSKARSTFSVYLPTIDRIQRQVVQREYKILNLLDFTSKRKRMSVIVRDEDGSIILFCKGADSIIFDRLSKNGKMYLEATTRHLNEYGEAGLRTLALAYRKLDEQEYFDWNNKFQKAKTAVGPDRDAMLEHVSDIMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKLWVLTGDKMETAINIGFACSLLRQGMKQICITTNSDPAINDGKEVIKGSILNQITNATQLIKLEKDPHAAFALIIDGKTLTYALEDDVKHQFLGLTQC 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00413 299 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 53 297 - -
Cca10g00413 299 Gene3D - 25 154 IPR023299 GO:0000166
Cca10g00413 299 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 53 297 - -
Cca10g00413 299 SUPERFAMILY HAD-like 168 236 IPR036412 -
Cca10g00413 299 Gene3D - 171 299 IPR023214 -
Cca10g00413 299 Pfam Cation transport ATPase (P-type) 52 102 - -
Cca10g00413 299 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 52 188 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00413 Cca-Chr10 4294288 4300519 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00413 54 296 Primary Pumps ATPases AT1G72700 77.459 3.71e-130 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00413 K01530 - gmx:100778710 451.44