Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00412 ATGGGAGTTTGTTTGAGCGCCCAAATTAAAGCTGAAACCAGCCCATATAACACCGGGTTCAATTCCAAGTATGTGAGTACGGATGGAAATGATCTTGGCAGCGCCAATAATAATTCAGCTATCTCAGTGCCCCAGACACCTCGGAGTGAGGGTGAGATCTTGCAGTCCGCCAATTTAAAGAGCTTTACCTTCTCAGAACTTAGGACAGCTACTAGAAATTTCCGTCCAGACAGTGTGTTGGGAGAAGGTGGTTTTGGATCGGTTTTTAAGGGGTGGATTGATGAGAATTCATTGACTGCTACCAGACCTGGCATTGGCATTGTTATTGCTGTTAAAAGACTTAATCAAGATGGCATCCAGGGTCACAGAGAGTGGTTGGCTGAAGTCAACTATTTAGGACAGCTTTCTCATCCTCATCTAGTGAGATTGATTGGCTTTTGCCTTGAAGATGAACACCGCCTTCTCGTCTATGAATTTATGCCTCGTGGAAGCTTGGAAAACCATTTGTTCAGGAGAGGCTCATATTTTCAACCACTTTCTTGGAGCCTCCGTTTGAAGGTTGCTCTTGATGCTGCCAAAGGGCTTGCATTTCTGCACAGTGCTAAAACAAAAGTGATATATAGAGATTTTAAGAGTTCAAATATCTTGCTGGATTCAAATTATAATGCAAAACTTTCTGATTTTGGGCTGGCAAAGGACGGACCAACAGGTGACAAAAGTCATGTCTCTACAAGGGTAATGGGTACCTATGGATATGCAGCTCCTGAATATCTTGCCACAGGTCATCTTACTGCTAAGAGTGATGTATATAGTTTTGGAGTTGTTCTGCTGGAAATGTTATCTGGCAAGAGGGCAGTTGACAAGAATAGACCATCTGGGCAACACAATTTGGTGGAATGGGCTAAGCCTTACCTGGCAAACAAACGTAGGGTGTTTCGCGTGTTGGACACACGGCTTGAAGGACAATATTCAACAGATGATGCCTGTAAGGTAGCCACCCTTGCCTTGAGGTGCCTATCAACAGAATCCAAGTTCAGGCCAAACATGGATGAAGTGGTTACATCTTTGGAGCAGCTGCAGGTTCCAATTGTAAATGGAGGCAATCGAGATTCTGGTAATGGACCTAGAGCTCGTAGAAGAAGTGCTGATATAAATGGAGGCAATCAAAATCCTTCTAGTAACGTGTCTCGACTACGTAGAAGAAGTGCTGACGATATTAGCCGTGTGGAGACTTCCATAGCTTATCCCCGGCCCTCTGCATCCCCTCTCTATACTTAA 1278 0.4429 MGVCLSAQIKAETSPYNTGFNSKYVSTDGNDLGSANNNSAISVPQTPRSEGEILQSANLKSFTFSELRTATRNFRPDSVLGEGGFGSVFKGWIDENSLTATRPGIGIVIAVKRLNQDGIQGHREWLAEVNYLGQLSHPHLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSAKTKVIYRDFKSSNILLDSNYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGKRAVDKNRPSGQHNLVEWAKPYLANKRRVFRVLDTRLEGQYSTDDACKVATLALRCLSTESKFRPNMDEVVTSLEQLQVPIVNGGNRDSGNGPRARRRSADINGGNQNPSSNVSRLRRRSADDISRVETSIAYPRPSASPLYT 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00412 425 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Cca10g00412 425 Gene3D Transferase(Phosphotransferase) domain 1 160 365 - -
Cca10g00412 425 CDD STKc_IRAK 80 359 - -
Cca10g00412 425 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Cca10g00412 425 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Cca10g00412 425 MobiDBLite consensus disorder prediction 383 397 - -
Cca10g00412 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Cca10g00412 425 MobiDBLite consensus disorder prediction 363 425 - -
Cca10g00412 425 SUPERFAMILY Protein kinase-like (PK-like) 51 361 IPR011009 -
Cca10g00412 425 ProSiteProfiles Protein kinase domain profile. 74 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00412 425 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 25 379 - -
Cca10g00412 425 PANTHER OS01G0588500 PROTEIN-RELATED 25 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00412 Cca-Chr10 4287619 4290644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00412 28 356 Glycoside Hydrolase AT3G07070 47.478 7.98e-106 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca10g00412 PK_Tyr_Ser-Thr 4.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00412 - - gmx:100798404 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00412 10 4287619 4290644 Cca10g00412 10 4287619 4290644 ECH
Cca10g00412 10 4287619 4290644 Cca04g00639 04 6310050 6313784 PCT