Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca10g00412 | ATGGGAGTTTGTTTGAGCGCCCAAATTAAAGCTGAAACCAGCCCATATAACACCGGGTTCAATTCCAAGTATGTGAGTACGGATGGAAATGATCTTGGCAGCGCCAATAATAATTCAGCTATCTCAGTGCCCCAGACACCTCGGAGTGAGGGTGAGATCTTGCAGTCCGCCAATTTAAAGAGCTTTACCTTCTCAGAACTTAGGACAGCTACTAGAAATTTCCGTCCAGACAGTGTGTTGGGAGAAGGTGGTTTTGGATCGGTTTTTAAGGGGTGGATTGATGAGAATTCATTGACTGCTACCAGACCTGGCATTGGCATTGTTATTGCTGTTAAAAGACTTAATCAAGATGGCATCCAGGGTCACAGAGAGTGGTTGGCTGAAGTCAACTATTTAGGACAGCTTTCTCATCCTCATCTAGTGAGATTGATTGGCTTTTGCCTTGAAGATGAACACCGCCTTCTCGTCTATGAATTTATGCCTCGTGGAAGCTTGGAAAACCATTTGTTCAGGAGAGGCTCATATTTTCAACCACTTTCTTGGAGCCTCCGTTTGAAGGTTGCTCTTGATGCTGCCAAAGGGCTTGCATTTCTGCACAGTGCTAAAACAAAAGTGATATATAGAGATTTTAAGAGTTCAAATATCTTGCTGGATTCAAATTATAATGCAAAACTTTCTGATTTTGGGCTGGCAAAGGACGGACCAACAGGTGACAAAAGTCATGTCTCTACAAGGGTAATGGGTACCTATGGATATGCAGCTCCTGAATATCTTGCCACAGGTCATCTTACTGCTAAGAGTGATGTATATAGTTTTGGAGTTGTTCTGCTGGAAATGTTATCTGGCAAGAGGGCAGTTGACAAGAATAGACCATCTGGGCAACACAATTTGGTGGAATGGGCTAAGCCTTACCTGGCAAACAAACGTAGGGTGTTTCGCGTGTTGGACACACGGCTTGAAGGACAATATTCAACAGATGATGCCTGTAAGGTAGCCACCCTTGCCTTGAGGTGCCTATCAACAGAATCCAAGTTCAGGCCAAACATGGATGAAGTGGTTACATCTTTGGAGCAGCTGCAGGTTCCAATTGTAAATGGAGGCAATCGAGATTCTGGTAATGGACCTAGAGCTCGTAGAAGAAGTGCTGATATAAATGGAGGCAATCAAAATCCTTCTAGTAACGTGTCTCGACTACGTAGAAGAAGTGCTGACGATATTAGCCGTGTGGAGACTTCCATAGCTTATCCCCGGCCCTCTGCATCCCCTCTCTATACTTAA | 1278 | 0.4429 | MGVCLSAQIKAETSPYNTGFNSKYVSTDGNDLGSANNNSAISVPQTPRSEGEILQSANLKSFTFSELRTATRNFRPDSVLGEGGFGSVFKGWIDENSLTATRPGIGIVIAVKRLNQDGIQGHREWLAEVNYLGQLSHPHLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSAKTKVIYRDFKSSNILLDSNYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGKRAVDKNRPSGQHNLVEWAKPYLANKRRVFRVLDTRLEGQYSTDDACKVATLALRCLSTESKFRPNMDEVVTSLEQLQVPIVNGGNRDSGNGPRARRRSADINGGNQNPSSNVSRLRRRSADDISRVETSIAYPRPSASPLYT | 425 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca10g00412 | 425 | Pfam | Protein tyrosine and serine/threonine kinase | 78 | 356 | IPR001245 | GO:0004672|GO:0006468 | |
Cca10g00412 | 425 | Gene3D | Transferase(Phosphotransferase) domain 1 | 160 | 365 | - | - | |
Cca10g00412 | 425 | CDD | STKc_IRAK | 80 | 359 | - | - | |
Cca10g00412 | 425 | Gene3D | Phosphorylase Kinase; domain 1 | 49 | 159 | - | - | |
Cca10g00412 | 425 | ProSitePatterns | Protein kinases ATP-binding region signature. | 80 | 112 | IPR017441 | GO:0005524 | |
Cca10g00412 | 425 | MobiDBLite | consensus disorder prediction | 383 | 397 | - | - | |
Cca10g00412 | 425 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 205 | 217 | IPR008271 | GO:0004672|GO:0006468 | |
Cca10g00412 | 425 | MobiDBLite | consensus disorder prediction | 363 | 425 | - | - | |
Cca10g00412 | 425 | SUPERFAMILY | Protein kinase-like (PK-like) | 51 | 361 | IPR011009 | - | |
Cca10g00412 | 425 | ProSiteProfiles | Protein kinase domain profile. | 74 | 364 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca10g00412 | 425 | PANTHER | SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED | 25 | 379 | - | - | |
Cca10g00412 | 425 | PANTHER | OS01G0588500 PROTEIN-RELATED | 25 | 379 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca10g00412 | Cca-Chr10 | 4287619 | 4290644 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca10g00412 | 28 | 356 | Glycoside Hydrolase | AT3G07070 | 47.478 | 7.98e-106 | 317 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-VIIa-2 | Cca10g00412 | PK_Tyr_Ser-Thr | 4.6e-46 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca10g00412 | - | - | gmx:100798404 | 760.37 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca10g00412 | 10 | 4287619 | 4290644 | Cca10g00412 | 10 | 4287619 | 4290644 | ECH | |
Cca10g00412 | 10 | 4287619 | 4290644 | Cca04g00639 | 04 | 6310050 | 6313784 | PCT |