Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00408 ATGGGTGTTGTCCTCTGCCTCTGCCTCATTTCCCTAATGTGGATCACGGAGGCAAGAATCCCCGGCGTCTACACGGGCGGCGCGTGGCAAAGTGCTCACGCCACCTTCTACGGAGGCTCCGACGCTTCCGGCACCATGGGAGGAGCATGCGGGTACGGAAACCTTTACAGCCAAGGATACGGAGTGAACACGGCGGCGCTGAGCACGGCACTGTTCAACAGTGGCCTGAGCTGCGCTCTTCCCAACGACAATGGGGGCTGGTGCAACCCTCCTCGCCCTCACTTCGACCTCGCCATGCCCATGTTCCTCCAAATCGCCGAGTACCGCGCCGGCATCGTTCCTGTCGCATATCGCAGGGTGGCGTGCAGGAAGCACGGGGGGATAAGGTTCACCATCAACGGTTTCCGTTACTTCAACTTGGTGCTGATCAGCAACGTCGCGGGTGCAGGGGATATCGTGCACGCGTACGTAAAGGGGTCTCGAACGGGGTGGATGCCTATGAGCAGGAACTGGGGTCAGAACTGGCAGTCAAACGCCGTTTTGGTGGGTCAGGCTTTGTCCTTCAGAGTCACCGGGAGTGACCGTCGCTCCTCCACTTCTTGGAACATTGTTCCACCCAATTGGCAATTTGGTCAAACTTTCACTGGAAAGAATTTCCGTGTCTGA 666 0.5811 MGVVLCLCLISLMWITEARIPGVYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCALPNDNGGWCNPPRPHFDLAMPMFLQIAEYRAGIVPVAYRRVACRKHGGIRFTINGFRYFNLVLISNVAGAGDIVHAYVKGSRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTGSDRRSSTSWNIVPPNWQFGQTFTGKNFRV 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00408 221 PANTHER EXPANSIN-A15 79 220 IPR002963 GO:0009664
Cca10g00408 221 PANTHER EXPANSIN-A15 4 79 IPR002963 GO:0009664
Cca10g00408 221 Gene3D - 127 219 IPR036749 -
Cca10g00408 221 SUPERFAMILY Barwin-like endoglucanases 9 145 IPR036908 -
Cca10g00408 221 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 127 IPR007112 -
Cca10g00408 221 PANTHER EXPANSIN 79 220 - -
Cca10g00408 221 PANTHER EXPANSIN 4 79 - -
Cca10g00408 221 SMART dpbb_1 64 117 IPR007112 -
Cca10g00408 221 Pfam Expansin C-terminal domain 128 205 IPR007117 -
Cca10g00408 221 Gene3D - 82 123 IPR036908 -
Cca10g00408 221 Gene3D - 15 80 IPR036908 -
Cca10g00408 221 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Cca10g00408 221 PRINTS Expansin signature 206 221 IPR002963 GO:0009664
Cca10g00408 221 SUPERFAMILY PHL pollen allergen 124 216 IPR036749 -
Cca10g00408 221 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Cca10g00408 221 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Cca10g00408 221 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Cca10g00408 221 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 137 216 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00408 Cca-Chr10 4249084 4250053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00408 1 221 Expansin Gene Family AT2G39700 70.817 5.16e-128 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00408 - - gmx:100791522 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00408 10 4249084 4250053 Cca10g00408 10 4249084 4250053 ECH
Cca10g00408 10 4249084 4250053 Cca05g01493 05 33883767 33885180 ECH
Cca10g00408 10 4249084 4250053 Cca01g01681 01 38551360 38553841 ECH
Cca10g00408 10 4249084 4250053 Cca04g00637 04 6294682 6296736 ECH
Cca07g01399 07 36725310 36728573 Cca10g00408 10 4249084 4250053 ECH
Cca10g00408 10 4249084 4250053 Cca04g00637 04 6294682 6296736 PCT