Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Cca10g00408
ATGGGTGTTGTCCTCTGCCTCTGCCTCATTTCCCTAATGTGGATCACGGAGGCAAGAATCCCCGGCGTCTACACGGGCGGCGCGTGGCAAAGTGCTCACGCCACCTTCTACGGAGGCTCCGACGCTTCCGGCACCATGGGAGGAGCATGCGGGTACGGAAACCTTTACAGCCAAGGATACGGAGTGAACACGGCGGCGCTGAGCACGGCACTGTTCAACAGTGGCCTGAGCTGCGCTCTTCCCAACGACAATGGGGGCTGGTGCAACCCTCCTCGCCCTCACTTCGACCTCGCCATGCCCATGTTCCTCCAAATCGCCGAGTACCGCGCCGGCATCGTTCCTGTCGCATATCGCAGGGTGGCGTGCAGGAAGCACGGGGGGATAAGGTTCACCATCAACGGTTTCCGTTACTTCAACTTGGTGCTGATCAGCAACGTCGCGGGTGCAGGGGATATCGTGCACGCGTACGTAAAGGGGTCTCGAACGGGGTGGATGCCTATGAGCAGGAACTGGGGTCAGAACTGGCAGTCAAACGCCGTTTTGGTGGGTCAGGCTTTGTCCTTCAGAGTCACCGGGAGTGACCGTCGCTCCTCCACTTCTTGGAACATTGTTCCACCCAATTGGCAATTTGGTCAAACTTTCACTGGAAAGAATTTCCGTGTCTGA
666
0.5811
MGVVLCLCLISLMWITEARIPGVYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCALPNDNGGWCNPPRPHFDLAMPMFLQIAEYRAGIVPVAYRRVACRKHGGIRFTINGFRYFNLVLISNVAGAGDIVHAYVKGSRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTGSDRRSSTSWNIVPPNWQFGQTFTGKNFRV
221
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Cca10g00408
221
PANTHER
EXPANSIN-A15
79
220
IPR002963
GO:0009664
Cca10g00408
221
PANTHER
EXPANSIN-A15
4
79
IPR002963
GO:0009664
Cca10g00408
221
Gene3D
-
127
219
IPR036749
-
Cca10g00408
221
SUPERFAMILY
Barwin-like endoglucanases
9
145
IPR036908
-
Cca10g00408
221
ProSiteProfiles
Expansin, family-45 endoglucanase-like domain profile.
47
127
IPR007112
-
Cca10g00408
221
PANTHER
EXPANSIN
79
220
-
-
Cca10g00408
221
PANTHER
EXPANSIN
4
79
-
-
Cca10g00408
221
SMART
dpbb_1
64
117
IPR007112
-
Cca10g00408
221
Pfam
Expansin C-terminal domain
128
205
IPR007117
-
Cca10g00408
221
Gene3D
-
82
123
IPR036908
-
Showing 1 to 10 of 18 entries
Previous
1
2
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Cca10g00408
Cca-Chr10
4249084
4250053
Dispersed/Wgd
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Cca10g00408
1
221
Expansin Gene Family
AT2G39700
70.817
5.16e-128
360
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Cca10g00408
-
-
gmx:100791522
425.631
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Event-related genes
Show
10
25
50
100
entries
Search:
Select
Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Cca10g00408
10
4249084
4250053
Cca10g00408
10
4249084
4250053
ECH
Cca10g00408
10
4249084
4250053
Cca05g01493
05
33883767
33885180
ECH
Cca10g00408
10
4249084
4250053
Cca01g01681
01
38551360
38553841
ECH
Cca10g00408
10
4249084
4250053
Cca04g00637
04
6294682
6296736
ECH
Cca07g01399
07
36725310
36728573
Cca10g00408
10
4249084
4250053
ECH
Cca10g00408
10
4249084
4250053
Cca04g00637
04
6294682
6296736
PCT
Showing 1 to 6 of 6 entries
Previous
1
Next
Select All
Download Selected Rows