Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00406 ATGGGAGGTGCTAGCGTGTTACAGTTATCCATATCCAGATTCAGAAGCAACCGCACCGTTTCTCTGTTCTCCGTTCGAGCCTGCAACGACCACCCTCGTGGCCCATCCTGCATCTACGTTGGTCCCCTCCACACCGCCACCAAGGAAACCCTCGAAGCTCTCTACTCCCAGGCGCGGGATGCATATTACAGTGGGAGTGGGGAGCCTTTGATTCTTGATGACATGTTTGATAGAGTAGAGTTGAAGCTTAAATGGTATGGTTCTAAGTCGGTTGTCAAGTACCCTCGATGCAGTATCAGGAGGCATTCAACTTATGCTGATGCCGACGAAGATCTGTCTATGGCTTTGGCATTAGCAAGCTTATGGTCCCTATTTCTTGCAATTGGCTCTTTGGCGTGTGTTTGGCCCATGTTTTATACCGTTACAACAGCTTATCAAAAAGCATTTGACTCAGGATTATCATATGGTAGCCAAGCATCAGGACTGGGACTAGGGCTTCTTTTTGCGGTAAATAGCAGTATCTTCATGGCGCTGGGTTTGGTCATTGGCTACCCAGTTGCTTCAGCTTCAGTTAAGGTGCTTCAAGGCCTGTGGAGGAATGATTTAGCGGCACTAAAGGGTTCATGTCCAAATTGTGGAGAAGAGGTATTTGCATTTGTGAGAACGGACAAGGCTAATAACTCACCCCATAGAGCAGATTGTCATGTGTGTGAATGCTTATTGGAATTTCGCACCAAAGTGGAGCAACCGGCTTTAAGATTAGGTAGACAATGGGTTTATGGGCGTATTTACCTTGTTCGTAGATCCAGACGCCAGAGAGGACTGTAA 828 0.4722 MGGASVLQLSISRFRSNRTVSLFSVRACNDHPRGPSCIYVGPLHTATKETLEALYSQARDAYYSGSGEPLILDDMFDRVELKLKWYGSKSVVKYPRCSIRRHSTYADADEDLSMALALASLWSLFLAIGSLACVWPMFYTVTTAYQKAFDSGLSYGSQASGLGLGLLFAVNSSIFMALGLVIGYPVASASVKVLQGLWRNDLAALKGSCPNCGEEVFAFVRTDKANNSPHRADCHVCECLLEFRTKVEQPALRLGRQWVYGRIYLVRRSRRQRGL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00406 275 PANTHER PGR5-LIKE A PROTEIN 23 272 - -
Cca10g00406 275 PANTHER PGR5-LIKE PROTEIN 1B, CHLOROPLASTIC 23 272 IPR039987 GO:0009535|GO:0009773|GO:0016730
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00406 Cca-Chr10 4231063 4233582 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00406 - - gmx:100791480 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00406 10 4231063 4233582 Cca10g00406 10 4231063 4233582 ECH
Cca10g00406 10 4231063 4233582 Cca04g00636 04 6279026 6286443 PCT