Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00405 ATGGGTAGCCCCGAGAAGAATGAAAATAAGGGCTTTTTCGCCGCCATGACTTCCGGCTTCTCCATGTTCAGCAACGCCATGCACCGATCTGTCAACGGGTTGCTGGGATATGAAGGGGTAGAAGTCATAAATCCAGAGGGTGGTAaagaggatgcagaagaggaagctcaaagaggaagatggaaACCAGAGGAAAGAGATGGTTACTGGAAGATGATGCACAAATATATCGGCTCGGATGTAACATCAATGGTAACACTACCAGTTATTATTTTTGAACCAATGACTATGCTTCAGAAAATGGCAGAGTTGATGGAGTACTCCTACCTGTTAGATAAGGCAGATGAATGTGAGGACCCGTACATGCGGCTGGTGTATGCATCGTCATGGGCTATATCTGTGTACTTTGCATACCAACGAATCTGGAAGCCTTTTAACCCTATCCTTGGAGAGACTTATGAGATGGTTAACCATGGTGGAATTACATTCCTAGCAGAACAGGTGAGTCACCATCCCCCAATGAGTGCTGGGCATGCTGAGAATGAGCATTTTACGTACGATGTGACTTCAAAGTTAAAGACGAAGTTTTTGGGAAATTCTGTTGATGTTTACCCTGTTGGAAGAACACGCGTAACCCTTAAGAAGGATGGTGTAGTCTTAGATTTGGTTCCCCCTCCAACCAAGGTTAATAATTTGATATTTGGCCGGACATGGATTGATTCACCTGGGGAGATGATAATGACAAATTTGACAACTGGGGACAAAGTTGTACTGTACTTTCAACCATGTGGATGGTTTGGGGCTGGTCGCTATGAAGTAGATGGATATGTTTATAATTCTGCCGAGGAGCCTAAAATATTGATGACTGGGAAGTGGAATGAGTCAATGAGTTATCAACCCTGTGATTTGGAAGGAGAGCCTCTTCCAGATACAGAATTGAAAGAGGTTTGGCATGTTGCTGATGTTCCACCGAATGATAAATTCCAGTATACACACTTTGCACATAAAATAAACAGCTTTGACACTGCCCCTAAAAAATTGTTGGCATCAGATTCTCGTTTACGCCCAGATAGATATGCACTTGAGTTGGGTGATCTATCCAAATCAGGAACAGAAAAGAGCAGTTTGGAGGAGAAGCAACGTGCTGAAAAGAGAACTCGAGAAGCCAAAGGGCATAATTTCACTCCAAGATGGTTTGATATAACTGAAGAAGTGACACAAACTCCTTGGGGTGATTTGGAGATCTACCAATACAATGGTAAATACAGCGAGCATCGGGCTGCTATAGATAACTCAGGCAGCATTGATCATGTTGATAATAAAGAAATTGAATTCAATCCATGGCAGTATGGTAATTTGTCCACGGAATGA 1371 0.415 MGSPEKNENKGFFAAMTSGFSMFSNAMHRSVNGLLGYEGVEVINPEGGKEDAEEEAQRGRWKPEERDGYWKMMHKYIGSDVTSMVTLPVIIFEPMTMLQKMAELMEYSYLLDKADECEDPYMRLVYASSWAISVYFAYQRIWKPFNPILGETYEMVNHGGITFLAEQVSHHPPMSAGHAENEHFTYDVTSKLKTKFLGNSVDVYPVGRTRVTLKKDGVVLDLVPPPTKVNNLIFGRTWIDSPGEMIMTNLTTGDKVVLYFQPCGWFGAGRYEVDGYVYNSAEEPKILMTGKWNESMSYQPCDLEGEPLPDTELKEVWHVADVPPNDKFQYTHFAHKINSFDTAPKKLLASDSRLRPDRYALELGDLSKSGTEKSSLEEKQRAEKRTREAKGHNFTPRWFDITEEVTQTPWGDLEIYQYNGKYSEHRAAIDNSGSIDHVDNKEIEFNPWQYGNLSTE 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00405 456 Gene3D - 358 448 - -
Cca10g00405 456 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 3C-LIKE ISOFORM X1 1 453 - -
Cca10g00405 456 MobiDBLite consensus disorder prediction 371 390 - -
Cca10g00405 456 Gene3D - 151 327 - -
Cca10g00405 456 SUPERFAMILY Oxysterol-binding protein-like 62 438 IPR037239 -
Cca10g00405 456 MobiDBLite consensus disorder prediction 369 390 - -
Cca10g00405 456 ProSitePatterns Oxysterol-binding protein family signature. 166 177 IPR018494 -
Cca10g00405 456 Pfam Oxysterol-binding protein 69 426 IPR000648 GO:0008289
Cca10g00405 456 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 1 453 IPR000648 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00405 Cca-Chr10 4222428 4227882 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00405 - - gmx:100779808 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00405 10 4222428 4227882 Cca10g00405 10 4222428 4227882 ECH
Cca10g00405 10 4222428 4227882 Cca04g00634 04 6256177 6271804 PCT