Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00403 ATGGATAGAAGAGTCTCGACCACGAATACTTGTGATGAAGAGTCTTACTTGGACGAGAATGATTCCTCCGCTGTTCTTAGCTACGTAAAGCAGATGCTGATGGAAGACGACACCGAGGAGAGGTACTCCATGTTCCAAGATTCCTTAGCTCTCCAACACACTGAGAGAGAATTGTACGAGGTTATTGCCAACAACAACCCtccacctccacctccaccttcttattcttcttcttcttcttcttcctcttcctcttcctcttcCACTGTCCTTCACGTTCATAACTATCCCAGCGTGGAGAGCCCCGATCAAAGCCTCTCTAGTACCTTCACTGATTATAGCATTGGCAGTAGCAGTACCACCAATTCCGCTGACTCTCCCTATAGTGCTGATGAACACAGCCCTATTCTTCCTACTAACCTTCTTCCTCCCTCTAATTCAACCCCCAACTTCACTACCCTCCACAATCCCTTTCTTCATTCTACTTTTCTACAGCAGTTCGAGAGAGGCGTGGAGCAAGGTACCCGCTTCCTTCCCAACACTAACTTTTTCCCTTCTTTCACAAACCCTCCGAATGTGGTAATCaagacagaagaagaagaagaagaagaCTTTGTGTCAAGAGGAAGGAGAATTCGTGAGCGTGAAGAGTACGATTTAGATGGAAGAAGCAGGAAACAATCAGCAGCGTATGTGGATGAAAATGATCTACCTGAACTCTTTGATAAAGTGCTTCTAAACACGGGGTTAGGAAAAGGTAAACCTCCAAACACGCCCCTCTACAACGAGACAATATTAACAAGCACGTTTGGTGGGAAGAGTGAGGAGGAAGTTGTGGATCTGAGGACACAGTTGATGCTTTGTGCACAGGCTATTGCTTCTAATAGTCCTTCATTTGCTAGGCAGTTAATAGAGCAGATTAAGCAGCATTCTTCTCCAATAGGTGATGACATTCAGAGGCTTGCACATTACTTTGGAAACGCCCTTGAAGCGCGTTTGGATGGAAGCGGTTACCAGGTTTTCAGGGTTCTATCCTCCAAAAGAACCACTGCTAAAGACATGATAAAAGCCTACCATGTGTACGTTTCCGTGTGTCCGTTTGAGAAGCTAGCAATCAGTTTCACCAACAACTCAATTTTCAATCGAACCCAGGATAAGAAAACAATTCACATCATAGACTTTGGTATCCGCTATGGCTTCAAGTGGCCTAAATTCATAAGCCGTCTATCAAGTCGCCCCGGTGGGCATCCCAAGGTTCGCATCACGGGGATAGATCAGCCACAACCAGGTTTCAGACCTGAAGAGAGGGTGCACGAGACGGGGCGTAGACTCGCAAGTTATTGCGAGCGTTTCAATGTTCCATTCGAGTTCAACGCAATTGCACAGAGATGGGACACCATCAGAGTTGAGGACCTCAAGATACAGACTAACGAATTCGTGGCTGTGAATTGCTTGTTTCATTTTGAGCATCTCCTTGATGAGACCGTGGTGTTGAATAATCCAAGAGATGCTGTTTTGAGGCTGATCAAGAAGGCCAACCCTGACATATTTGTTCATAGCATTGTCAACGGAAGCTATGATGTACCCTTCTTCGTGTCACGCTTCAGGGAGGCTCTCTTTCATTACTCTGCATTGTTTGACATGTTGGACACCACCGTTGGTCGTGAGGATCCCATGAGGTTAATGTTTGAGAAGGAGTTGTATGGTCGGGAGATAATGAACATTGTGGCTTGTGAAGGTTGTGATAGGATTGAGAGGCCTCAGACATACAAGCAGTGGCAGCTTCGGAACATGAGAGCAGGGTTGAGGCCACTTCCTCTCGATTGCAAAATCATTGAAAGAGTGAAGAATAGGTTGAAAGATGATGGATACAACCCTAGTTTCAATCTAGAGGTGGATGGCAACTGGATGCTACAAAGTTGGAAGGGTCGAGTTCTGCATGCTTCCTCTTGTTGGGTACCAGCATAA 1968 0.4385 MDRRVSTTNTCDEESYLDENDSSAVLSYVKQMLMEDDTEERYSMFQDSLALQHTERELYEVIANNNPPPPPPPSYSSSSSSSSSSSSSTVLHVHNYPSVESPDQSLSSTFTDYSIGSSSTTNSADSPYSADEHSPILPTNLLPPSNSTPNFTTLHNPFLHSTFLQQFERGVEQGTRFLPNTNFFPSFTNPPNVVIKTEEEEEEDFVSRGRRIREREEYDLDGRSRKQSAAYVDENDLPELFDKVLLNTGLGKGKPPNTPLYNETILTSTFGGKSEEEVVDLRTQLMLCAQAIASNSPSFARQLIEQIKQHSSPIGDDIQRLAHYFGNALEARLDGSGYQVFRVLSSKRTTAKDMIKAYHVYVSVCPFEKLAISFTNNSIFNRTQDKKTIHIIDFGIRYGFKWPKFISRLSSRPGGHPKVRITGIDQPQPGFRPEERVHETGRRLASYCERFNVPFEFNAIAQRWDTIRVEDLKIQTNEFVAVNCLFHFEHLLDETVVLNNPRDAVLRLIKKANPDIFVHSIVNGSYDVPFFVSRFREALFHYSALFDMLDTTVGREDPMRLMFEKELYGREIMNIVACEGCDRIERPQTYKQWQLRNMRAGLRPLPLDCKIIERVKNRLKDDGYNPSFNLEVDGNWMLQSWKGRVLHASSCWVPA 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00403 655 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 654 IPR005202 -
Cca10g00403 655 MobiDBLite consensus disorder prediction 114 129 - -
Cca10g00403 655 MobiDBLite consensus disorder prediction 77 91 - -
Cca10g00403 655 MobiDBLite consensus disorder prediction 62 91 - -
Cca10g00403 655 MobiDBLite consensus disorder prediction 114 149 - -
Cca10g00403 655 Pfam GRAS domain family 281 652 IPR005202 -
Cca10g00403 655 ProSiteProfiles GRAS family profile. 272 653 IPR005202 -
Cca10g00403 655 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 14 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00403 Cca-Chr10 4199642 4201899 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00403 25 655 GRAS Transcription Factor Family AT1G07530 45.584 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca10g00403 GRAS 3e-108 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00403 - - gmx:100780343 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00403 10 4199642 4201899 Cca10g00403 10 4199642 4201899 ECH
Cca10g00403 10 4199642 4201899 Cca04g00633 04 6246505 6249114 ECH
Cca07g01404 07 36926389 36930303 Cca10g00403 10 4199642 4201899 ECH
Cca01g01686 01 38735204 38738927 Cca10g00403 10 4199642 4201899 ECH
Cca10g00403 10 4199642 4201899 Cca04g00632 04 6242146 6244735 PCT
Cca04g00631 04 6237314 6239353 Cca10g00403 10 4199642 4201899 PCT