Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00402 ATGGATCCAAACTCTCTTGCTACCGACTACGCCTTTGACCATCAAGGGAACTGGGACTTTTCTTATCAATCCGATGTGGGGCCAATTGGGTTTTCTGCCAACTCAATGTTAAACCCGGACCCCTCCTCCGCCGCCACGGTGGCGGATCCTCCCCTCGAGGAAGATACTGATTTTACGGAAACCTTCAAGTTCATAAGTCAAATTCTCATGGAAGAGAATTTTGACCAGAAACCCTGCATGTGTTACGACCCTCTGACTCTGCAACACACTGAGAAATCCTTCTACGATGTCTTGGAGTTGGATCCAGCGCTTCCTCTTTCCCCTAATCAGCACCCTCTGGAGAGCCCCGATGGGAATTCTTCAAATTCCACCACTGATTCCGCCATTTCTCAAGATTTGAAGCCTCATTCACCTGACACACctgtttctgtttctgctgctgctgatgctTTCATTTCCTCTTCTCTTGTTCCACCGCATGATTTGACTGGAGTTAACGATGGAGTCTTGGATTTAGATTCTTCTGCGGCAAGCAAGCTGATGGCGGAAAATATTTTCAGTGATGCAGACTCCATGTTGCAGTTTAGAAGAGGGCTGGAGGAGGCTAGCAAGTTTCTTCCTCAAAGGCCTCAACTTTTCACTGGGTTGGAGAGCAATAGcaccaccaccaccaccaccaccaTGGTCTCTGCAGAGCCAGAGGGAGGAGGGGTGGTTGTGAAGATGGAGAATAATAATTCACATGGGGTGAAGAGTAGGAAGAATCACGCGCGCcaagatgaagaagaagggggaagaagcaacaagcaGTCCGCAGGTTGTGCTGAGGAAGAGAGTGAAATATCAGAAATGTTTGATCGGGTGTTGCTGAGTGTTGAAAATGTGCCACTCTGTGCTGAACACAAGAGTGGACCCGTGGCAGTGGGTGATGGTAGCACAAAGAGTGAGCAAACCCATGTGTTTGATGGAGGGAAGGTTCGTTCCAAGAAGCAAGGGAAGAAGAAGGAAACGGTGGATTTGAGGACCCTATTGGTTCTGTGTGCACAGGCTGTGTCTGCCAGTGACAACAGGACTGCTAATGAATTGCTGAAGCAGATTAGGCAGCATTCTACACCCTTGGGTGATGCCTCCCAGAGGTTGGCTCATTATGTGGCCAATGGTCTCGAGGCACGCTTGGTTGGTGCTGGAACTGGAACACAGATATTTTACATGAGCCACAAGAAGTTCACTGCTGCTGATTACCTGAAAGCTTACCAAGTTTTCATATCTGCCTGCCCCTTCAAGAAATTTTCACATTTCTTTGCAAATAAAATGATATTGAAAACAGCTGAAAAGGCAGAAACGCTTCATATAATTGATTTTGGTATCCTGTATGGCTTCCAGTGGCCAATTCTTATCAGGTTTCTATCAAGTAGAAGTGGAGGGCCTGCCAAGCTGCGGATCACAGGAATAGAGTATCCCCAAGCTGGCTTTCGTCCGGCTGAAAGAATTGAGGAGACCGGCCGTCGTCTAGCTAAGTATTGTGAGCGTTTCAATGTTCCTTTTGAGTACAACGCCATAGCATCACGAAACTGGGAAACCATTCAAATTGAAGACCTTAAAATACAGAGCAATGAGGTGGTTGCTGTGAACTGTCTGATAAGGTTTAAGAATTTGCTTGATGAGTCAATTGAGGTGAAGAGTCCCAGAAATGCTGTTCTGAATTTAATCAGGAAGATGAATCCGGATATTTTTGTTCACGCCATAGTAAATGGATCTTATAATGCCCCTTTCTTTGTCACGCGCTTCAGGGAGGCACTGTTCCATTTCTCTTCGATTTATGATATGTTTGACACTCTCATATCCCGTGAAAATGAGTGGAGGTTGATGATTGAGAGAGAATTCTCGGGTCGGGAGATCATGAATGTTGTAGCATGTGAAGCTCTTGAGAGGGTTGAACGGCCCGAGTCATACAAACAGTGGCAGGCTAGGAATACTAGAGCTGGTTTTAAGCAGCTGCCGCTGGATAAGGAGATAATGGCCAAATTTAGGGGCAAGTTAAAGGAATGGTACCACAAGGATTTTGTCTTTGATGAAGATTGCAACTGGATGCTTCAAGGTTGGAAGGGTCGCATTTTGTATGCTTCATCTTGTTGGGTGCCAGCATGA 2148 0.4427 MDPNSLATDYAFDHQGNWDFSYQSDVGPIGFSANSMLNPDPSSAATVADPPLEEDTDFTETFKFISQILMEENFDQKPCMCYDPLTLQHTEKSFYDVLELDPALPLSPNQHPLESPDGNSSNSTTDSAISQDLKPHSPDTPVSVSAAADAFISSSLVPPHDLTGVNDGVLDLDSSAASKLMAENIFSDADSMLQFRRGLEEASKFLPQRPQLFTGLESNSTTTTTTTMVSAEPEGGGVVVKMENNNSHGVKSRKNHARQDEEEGGRSNKQSAGCAEEESEISEMFDRVLLSVENVPLCAEHKSGPVAVGDGSTKSEQTHVFDGGKVRSKKQGKKKETVDLRTLLVLCAQAVSASDNRTANELLKQIRQHSTPLGDASQRLAHYVANGLEARLVGAGTGTQIFYMSHKKFTAADYLKAYQVFISACPFKKFSHFFANKMILKTAEKAETLHIIDFGILYGFQWPILIRFLSSRSGGPAKLRITGIEYPQAGFRPAERIEETGRRLAKYCERFNVPFEYNAIASRNWETIQIEDLKIQSNEVVAVNCLIRFKNLLDESIEVKSPRNAVLNLIRKMNPDIFVHAIVNGSYNAPFFVTRFREALFHFSSIYDMFDTLISRENEWRLMIEREFSGREIMNVVACEALERVERPESYKQWQARNTRAGFKQLPLDKEIMAKFRGKLKEWYHKDFVFDEDCNWMLQGWKGRILYASSCWVPA 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00402 715 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 35 714 IPR005202 -
Cca10g00402 715 MobiDBLite consensus disorder prediction 244 278 - -
Cca10g00402 715 Pfam GRAS domain family 340 712 IPR005202 -
Cca10g00402 715 MobiDBLite consensus disorder prediction 112 138 - -
Cca10g00402 715 MobiDBLite consensus disorder prediction 247 267 - -
Cca10g00402 715 PANTHER SCARECROW-LIKE PROTEIN 34 35 714 - -
Cca10g00402 715 MobiDBLite consensus disorder prediction 105 142 - -
Cca10g00402 715 ProSiteProfiles GRAS family profile. 331 713 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00402 Cca-Chr10 4186165 4189741 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00402 61 715 GRAS Transcription Factor Family AT1G07530 49.929 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca10g00402 GRAS 1.9e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00402 - - aprc:113855970 1028.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00402 10 4186165 4189741 Cca10g00402 10 4186165 4189741 ECH
Cca10g00402 10 4186165 4189741 Cca04g00632 04 6242146 6244735 ECH
Cca10g00402 10 4186165 4189741 Cca04g00631 04 6237314 6239353 PCT
Cca04g00630 04 6229485 6232154 Cca10g00402 10 4186165 4189741 PCT