Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00401 ATGTCTTCTAATTTCTTGGTAGAGTCCAACATGTTTTCTTCGAATCCTCTTGTGCAAAATTATGGTGGTCCTATATCGGTAATTTCAAATCAGAACCAAGTAACGAAGGGGTTTGAGTTTGATGATTCATCGTCCCCTTCTTCTGGCACAAGTTCAATTGGAGAATCCACGGAGGTAACCAAGTATGCCAACCCCATCCTCAGATACATAAGCGACATCCTCATGGATGAGGAAGATGATTTGGAGCGGAAACCCTGCATGTTGCAGGAGTGTTTGAGACTCCAGGCTGCTGAAAAGTCCTTCTACGATGCCCTTGGCCATAGCTACCCTTCATCACAACGTCAAAACCCTTCTTGTTATGAAAGCGTTGACATCACAGACTCTGATGAAAATTATGGTCGCACTGCTAGTTTTGAGAGCAACAGCAGCTGCACCACTGATAACTCATATGAGTCTGACTTGGTTAACACTGTTGGTGAATTTGACTCTTCTTTTCTACAACTACAAACCCCTCATGATCAATTTGGGGGGTCACAAGCTGTTGGTTATTTTCATGATGGAACCTGGAATCTCTTCCAGTCTCAGACCAAGCCACTGATGGTGGAAGACTACTTTCAATCTGCTTCAGATTCAGCACCAAGAGAAAAGAGAAGCCATCAGATGGGCGATGATGATGATGATGCTTCTCATGAACAAGAAGGAAGAAGAGGTAACAAGGTTTCAGCTGTCTTTTCTGACGAGTCAGAGGCACCAGAGATCTTAGATGAGGTTCTGAGTTATCAATGTGGAAGAAGTCAATCCAAACTTTGTGCTACTATTGAACCATCACAGAGTGTTGTTGATTTAGGAGGGTCCAATGGAAAGGCAACACGTTCACGTTCAAAGAAAGGGTCAACCAAAGCAGGTGCAGCTGTAGATTTATGGACCCTTCTAACTCAATGTGCACAGGCAGTGGCAAGCTTTGACCAAAGGAATGCAAATGAATTACTCAGCCAGATAAGGCAACACTCTTCACCTCATGGGGATGGACTCCAGCGTTTAGCTCATTACTTTGCCAATGGCCTTGAGATAAGGTTGGCTGCTGGGACCCCATCATACATGCCCCTAGAAGTGGCAACTTCTGCAGATATGCTGAAAGCTTACAAACTATTCGTTACATCCTCTCCTTTGCAGATGTTGTCAAATTTATTGACAACCAAGACAATCTTTAGTCTTGTGAAAAATGAGAGCAGCGTTCATGTCATTGACTTTGGCGTTTGCTATGGTTTTCAGTGGCCCTGCCTTGTCAAATTGCTGTCAGAAAGGCAAGGAGGTCCTCCAAAACTTCGTATAACAGGAATTGAACTTCCACAACCGGGTTTTCGGCCTGCAGAAAGGGTTGAGGAGACCGGAAGGCGACTGGAAAACTACTGCAAGAAGTGGAAGGTTCCTTTTGAATACAATTGCCTTGCACAGAAATGGGAAACTATAACACTTGAGGATCTCAAGATAGACAGGAACGAAGTAACTGTTGTTAGCTGTTTGTACAGGCTTAAGAACCTGCCAGATGAAACTGTGGCAGTGAACTGTCCAAGAGATGCTGTGTTGAAGTTGATCAGGAAGATCAATCCAAACATCTTCGTCCATGGGGTGGTCAATGGCACTTATAGTGCACCCTTTTTCCTGACTCGGTTCAGAGAGGCACTCTACCACTTCTCATCACTGTTTGATATGTTTGAGGTTAATGTGCTTCGTGAAGACCCGCAAAGAGTGATGCTTGAGAAAGGGATGTTTGGAACTGATGCCATCAATGTTATAGCGTGTGAGGGGGCTGAGAGGGTTGAGAGGCCAGAGACCTACAAGCAATGGCAGGTCAGGAACCTGAGAGCTGGGTTGAAGCAAGTCCGTTTCGATCCTCAGTTGGTGAAGGATGCCAAAGAAATAGTGAAGAAGGAATATCACAAAGATTTTGTAGTGGCAGAGGATGGCAAGTGGGTTTTGCAGGGGTGGAAAGGGCGTATTCTGAATGCCATTTCTGCTTGGACTCCTGCTTAA 2034 0.4484 MSSNFLVESNMFSSNPLVQNYGGPISVISNQNQVTKGFEFDDSSSPSSGTSSIGESTEVTKYANPILRYISDILMDEEDDLERKPCMLQECLRLQAAEKSFYDALGHSYPSSQRQNPSCYESVDITDSDENYGRTASFESNSSCTTDNSYESDLVNTVGEFDSSFLQLQTPHDQFGGSQAVGYFHDGTWNLFQSQTKPLMVEDYFQSASDSAPREKRSHQMGDDDDDASHEQEGRRGNKVSAVFSDESEAPEILDEVLSYQCGRSQSKLCATIEPSQSVVDLGGSNGKATRSRSKKGSTKAGAAVDLWTLLTQCAQAVASFDQRNANELLSQIRQHSSPHGDGLQRLAHYFANGLEIRLAAGTPSYMPLEVATSADMLKAYKLFVTSSPLQMLSNLLTTKTIFSLVKNESSVHVIDFGVCYGFQWPCLVKLLSERQGGPPKLRITGIELPQPGFRPAERVEETGRRLENYCKKWKVPFEYNCLAQKWETITLEDLKIDRNEVTVVSCLYRLKNLPDETVAVNCPRDAVLKLIRKINPNIFVHGVVNGTYSAPFFLTRFREALYHFSSLFDMFEVNVLREDPQRVMLEKGMFGTDAINVIACEGAERVERPETYKQWQVRNLRAGLKQVRFDPQLVKDAKEIVKKEYHKDFVVAEDGKWVLQGWKGRILNAISAWTPA 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00401 677 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 23 676 - -
Cca10g00401 677 MobiDBLite consensus disorder prediction 37 56 - -
Cca10g00401 677 Pfam GRAS domain family 309 675 IPR005202 -
Cca10g00401 677 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 23 676 IPR005202 -
Cca10g00401 677 MobiDBLite consensus disorder prediction 206 238 - -
Cca10g00401 677 ProSiteProfiles GRAS family profile. 298 675 IPR005202 -
Cca10g00401 677 MobiDBLite consensus disorder prediction 209 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00401 Cca-Chr10 4172367 4174824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00401 65 677 GRAS Transcription Factor Family AT5G59450 43.961 1.37e-171 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca10g00401 GRAS 4.7e-109 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00401 - - aprc:113855970 1072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00401 10 4172367 4174824 Cca10g00401 10 4172367 4174824 ECH
Cca10g00401 10 4172367 4174824 Cca04g00630 04 6229485 6232154 ECH
Cca10g00401 10 4172367 4174824 Cca04g00628 04 6225904 6227824 PCT