Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00393 ATGAACTCAGACACGACGTCGTATTGGTGCTACAGCTGCACCCGTTTCGTTCAAATCATCGACCAAAGCCACGTCGTTTGCCCGCACTGCCAAGGCGGCTTCGTCGAGAAGGTCAACACCGCCCACTcgcccctcgccgccgcccccaggaggcagcccttccgccgccgccgccgcaacgccgccACGCACTCGCCGTTCAACCCTGTCATCGTCCTCCGGGGACCCGGCGACGACGAGGACAGCAGCTTCGAGCTCTACTACGACGGCGACGACGGCGCGGGGCTCCGACCGCTGCCCTCGACCATGTCGGAGTTCCTCCTCGGATCCGGCTTCGACCGCCTCCTGGAGCAGGTCGAGGCCGAGATGCACTGCGCCGTGTGCAAGGAGGCCTTCGAGGCACGCGCCTTGGCGCGTGAGATGCCGTGCAAGCACGTTTACCACGCCGATTGCATTCTCCCGTGGCTCTCCATGCGAAACTCGTGTCCGGTCTGCCGCCACGAGCTGCCGTCGGACCAGGCCTCGCCGGAGGGGAGAGGCGCCGGCCAGATCGAGGAGGAGGCGGCGGTCGGGTTGACCATATGGAGGCTTCCCGGCGGCGGATTCGCCGTCGGGAGATTCGCCGGCGAGAGCCACGTGCCGGTGGTGTACACCGAGGGGGAGAGCGGTGGAAATTCGAACGAAGATTCTAGAAGAATCTCTCTGGCGGTGGGAAGCGGAAGGGTTAGAGAGAGTCGTGGAATTGGGAGAATTTTCCGCAATTTGTTTGGGAGAATTGGGGCTTTTACTAGAAGCCGAACCCTTTCAACTTCCTTCTTCAGTAGAAGAAGAACAACTAGTAGAACTTGGGTCGTGCAGAATTGA 864 0.566 MNSDTTSYWCYSCTRFVQIIDQSHVVCPHCQGGFVEKVNTAHSPLAAAPRRQPFRRRRRNAATHSPFNPVIVLRGPGDDEDSSFELYYDGDDGAGLRPLPSTMSEFLLGSGFDRLLEQVEAEMHCAVCKEAFEARALAREMPCKHVYHADCILPWLSMRNSCPVCRHELPSDQASPEGRGAGQIEEEAAVGLTIWRLPGGGFAVGRFAGESHVPVVYTEGESGGNSNEDSRRISLAVGSGRVRESRGIGRIFRNLFGRIGAFTRSRTLSTSFFSRRRTTSRTWVVQN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00393 287 CDD RING-H2_RNF126_like 125 166 - -
Cca10g00393 287 Pfam Ring finger domain 124 166 IPR001841 -
Cca10g00393 287 SUPERFAMILY RING/U-box 119 172 - -
Cca10g00393 287 Pfam Protein of unknown function (DUF1117) 190 278 IPR010543 -
Cca10g00393 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 120 246 - -
Cca10g00393 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 119 - -
Cca10g00393 287 PANTHER OS05G0110000 PROTEIN 120 246 - -
Cca10g00393 287 PANTHER OS05G0110000 PROTEIN 4 119 - -
Cca10g00393 287 ProSiteProfiles Zinc finger RING-type profile. 125 166 IPR001841 -
Cca10g00393 287 SMART ring_2 125 165 IPR001841 -
Cca10g00393 287 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Cca10g00393 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 181 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00393 Cca-Chr10 4116138 4117345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00393 88 177 C3H Transcription Factor Family AT5G01980 36.364 7.79e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00393 - K11982 vun:114185595 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00393 10 4116138 4117345 Cca10g00393 10 4116138 4117345 ECH
Cca07g01413 07 37198080 37199786 Cca10g00393 10 4116138 4117345 ECH