Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00391 ATGCATGCAATAACTCTCTCTCTCACTGCAAACACCTTCCTTCGTTCCTCTCACACTCATCTTCCTTTCAGATCTCTTCAACCAAGTTGTTGCATACCCACTTGTAAAATTAGCTATGGAATTCGTTTCAACCGTTCACAGCGGAAGCACGAGAAGAAGAAAGGAATCGTGGTTGTGAGAGCAAGGCGTAGCGAGTCTCCATACGAAGTTTTGGGCGTGTCCCCATCCGCAACTGTCGCTGAAATCAAAAAGGCGTATCGGAAACTCGCTCTCAAGTATCATCCCGATGTCAATAAAGAGGATAAGGCACAGGAGAAATTTATGAGGATAAAACATGCATACAATACATTGCTAAATTCTAGTTCCCGCAAAAAGTATGATTCTGGAAACCAGGGTTATGATTTTTCTCAAGGAAAACGAAGTAGGAATGCACAAGCCGAAGAAGAATTTTATGGACTAGAGGACTTCTTTAGGGATCTTCAAGAAGAATTCAGGAACTGGGAAGCAAACGCTGCTTCACAAGGAAAGCCAAAGAGTCTATGGGAGGAATTGGCGGAAATAGGAGAAGATTTTGTGGAGTTCCTAGAGAAAGAACTGAATATTAGTGATCAAAATGACAATTATAAAACACCTGAGGGAGGAAATGCATCCAACTTTTCAGAGGCAGAAACACCAAGTCAAGGTGAAGCTAGCAAGGGAAACAGAAGTGTTCAGGATAACCTTGATGAAATAGAAGCCACTCTGGCTCAGTTGAAAAAGGAATTAGGCTTGTAG 774 0.4212 MHAITLSLTANTFLRSSHTHLPFRSLQPSCCIPTCKISYGIRFNRSQRKHEKKKGIVVVRARRSESPYEVLGVSPSATVAEIKKAYRKLALKYHPDVNKEDKAQEKFMRIKHAYNTLLNSSSRKKYDSGNQGYDFSQGKRSRNAQAEEEFYGLEDFFRDLQEEFRNWEANAASQGKPKSLWEELAEIGEDFVEFLEKELNISDQNDNYKTPEGGNASNFSEAETPSQGEASKGNRSVQDNLDEIEATLAQLKKELGL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00391 257 MobiDBLite consensus disorder prediction 121 140 - -
Cca10g00391 257 CDD DnaJ 67 119 IPR001623 -
Cca10g00391 257 Pfam DnaJ domain 67 127 IPR001623 -
Cca10g00391 257 SUPERFAMILY Chaperone J-domain 64 153 IPR036869 -
Cca10g00391 257 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Cca10g00391 257 MobiDBLite consensus disorder prediction 204 241 - -
Cca10g00391 257 MobiDBLite consensus disorder prediction 121 141 - -
Cca10g00391 257 Gene3D DnaJ domain 63 173 IPR036869 -
Cca10g00391 257 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 31 255 - -
Cca10g00391 257 MobiDBLite consensus disorder prediction 203 241 - -
Cca10g00391 257 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Cca10g00391 257 SMART dnaj_3 65 122 IPR001623 -
Cca10g00391 257 Coils Coil 234 257 - -
Cca10g00391 257 PRINTS DnaJ domain signature 68 86 IPR001623 -
Cca10g00391 257 PRINTS DnaJ domain signature 86 101 IPR001623 -
Cca10g00391 257 PRINTS DnaJ domain signature 102 122 IPR001623 -
Cca10g00391 257 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 31 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00391 Cca-Chr10 4108226 4111447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00391 68 128 C2H2 Transcription Factor Family AT1G74250 40.299 4.04e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00391 - - gmx:100793601 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00391 10 4108226 4111447 Cca10g00391 10 4108226 4111447 ECH