Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00380 ATGAGGAAGCCAGAGGCGTATGGTACTAAAAACAAAAACTGTAGCAAGCTTAGAAAAGGGTTGTGGTCACCAGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAATGCACAAGGGTGTTGGAGCGATGTGGCGAGAAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGTAGGCTTCGATGGATCAATTACTTGAGACCTGATCTTAAGAGAGGTGCATTCTCACCCCAAGAGGAGGAACTCATCATACACTTGCATTCCCTTCTTGGTAACAGATGGTCTCAAATAGCGGCGCGCTTGCCTGGTCGAACCGACAATGAAATAAAAAACTTTTGGAACTCAACGATAAAGAAAAGACTCAAGAACATGTCCTccacgaccacaacctcaacctcaccaaacGCAAGCGAATCCTCGTCTGAACCTAGTAAAGACCTCAACATGGGAGGGTTTATGTCTACGCAGCAACATCACCAACATGCACGCTTTGTGCCTATGTTCGCTTCATCTCCATCACCATCACCATCAATGCAAACCACAGTTTTCAATACCATGATTGAAAGGTTGCCTATGCTGGAGCATGGATCAACCATGCAACCTTCTGGAGGGTACTTTGAAGGAATAGGATCATGCTTTTCTCAAAGTGAAGTTTACAACAAAGGTTCTTATTTGGAAAACGGAGTGTTTGGGAGTGTAAATATCGGGGTAGAAGGGGATATGTTTGTTCCTCCCCTTGAGAATGTTAGCACCACTGTTAATCATAATAACCTGAGTAGCACGTGCATGGGAGAAACTAACAACAGTTACTTTGATGACATAAATAGTATCCTTAATAACTGCAACGTTGGCATAGCTGAAAATAAAGCTGGGGTGGAGAATTTGTTTCAACAAGAGTTAGCCACGGGAGAATGGGACTTTGAGGAGTTCATGAAAGATATTTCCTCCTTCCCTTTTGTTGACTTTTCATTCTAA 975 0.4144 MRKPEAYGTKNKNCSKLRKGLWSPEEDDKLMNYMLNNAQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSTTTTSTSPNASESSSEPSKDLNMGGFMSTQQHHQHARFVPMFASSPSPSPSMQTTVFNTMIERLPMLEHGSTMQPSGGYFEGIGSCFSQSEVYNKGSYLENGVFGSVNIGVEGDMFVPPLENVSTTVNHNNLSSTCMGETNNSYFDDINSILNNCNVGIAENKAGVENLFQQELATGEWDFEEFMKDISSFPFVDFSF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00380 324 CDD SANT 22 66 IPR001005 -
Cca10g00380 324 MobiDBLite consensus disorder prediction 123 148 - -
Cca10g00380 324 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Cca10g00380 324 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Cca10g00380 324 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Cca10g00380 324 Gene3D - 73 147 - -
Cca10g00380 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Cca10g00380 324 PANTHER MYB DOMAIN PROTEIN 55 9 323 - -
Cca10g00380 324 PANTHER MYB TRANSCRIPTION FACTOR 9 323 - -
Cca10g00380 324 CDD SANT 74 114 IPR001005 -
Cca10g00380 324 Gene3D - 16 72 - -
Cca10g00380 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 66 IPR017930 -
Cca10g00380 324 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Cca10g00380 324 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Cca10g00380 324 SMART sant 71 119 IPR001005 -
Cca10g00380 324 SMART sant 18 68 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00380 Cca-Chr10 4009371 4012087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00380 3 322 MYB Transcription Factor Family AT3G08500 44.737 2.54e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca10g00380 Myb_DNA-binding 2.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00380 K09422 - gmx:100799410 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00380 10 4009371 4012087 Cca10g00380 10 4009371 4012087 ECH
Cca10g00380 10 4009371 4012087 Cca04g00578 04 5819503 5822018 PCT