Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00379 ATGTCTAATTTGACTTGTGCATCCGGTGAAGCTAGTGCTTCTTCAGGCAACAGAACCGAAATTGGCACTGATTACTCTCAACAATACTTTGCTCCACCAACAACTCAAACTCAGCCTCCACTAAAGAAAAAGAGAAACCTTCCTGGCAACCCAGACCCGGAAGCTGAAGTGGTCGCGTTGTCTCCAAAGACCCTTTTGGCGACCAATAGGTTCATTTGTGAGATCTGCAACAAGGGATTTCAAAGAGATCAGAATCTTCAACTTCACAGAAGAGGGCATAACTTACCGTGGAAGCTGAAGCAGAGAACAAGCAAGGAGATAAGGAAGAAGGTGTATGTGTGTCCAGAAGTTACTTGCGTACACCACGACCCTTCGAGGGCACTGGGGGACCTAACCGGTATCAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGTGACAAATGCTCCAAGAAGTATGCTGTTCAATCTGACTGGAAAGCACACTCCAAAACCTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCCTTCTGTGATGCATTAGCAGAGGAGAGTGGAAGATCTGTGGCaggcacaggcacaggaataggcttaggcataggcaACTCAAGTGAAACTCCTGAAGCAGCTCATGCAGGAATGATGATCTCTTCAGCTTCAGCCACTCACGATGAAGACATATTCCATGGATTGAAGGAAGAGCAACAAAGTTTGATGGCCCCTTGGGTTGGAGCACCATCATCATCATTCTTCTCTCCTCACGAAAACCCTAACCCTAGAGGTGGTCCCACTCTTCCTCACATGTCAGCCACAGCGTTGCTGCAGAAAGCAGCGGAAATGGGTGCAACGATGAGCTTGACTAGGACCCACCAACAACAGCAACAGGCTCACGTGTGTACCAATGCTGCTTTGGATTTGTCCTCACGTGAGGACCAGATGACCCCCACACTCCTTCACCATGTTATCAACTCTTTCTCTTCTCCCTTTCAAGGGACTTCTTTTGACCACACTTTTGGTGGCTGTGCGCCCAAAACAACCACCGCTCATGCCGCCGGAAATAATAACAGTGAAGCCCTCACCAGAGATTTCTTGGGTCTTACATCCCTCTCTCACAATGATTTTCTCAACATTGCTGCCATGGGAAACTGCATCAATAACCAAACCCAAAACCCTTGGCAAGGTTAG 1236 0.4652 MSNLTCASGEASASSGNRTEIGTDYSQQYFAPPTTQTQPPLKKKRNLPGNPDPEAEVVALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEVTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESGRSVAGTGTGIGLGIGNSSETPEAAHAGMMISSASATHDEDIFHGLKEEQQSLMAPWVGAPSSSFFSPHENPNPRGGPTLPHMSATALLQKAAEMGATMSLTRTHQQQQQAHVCTNAALDLSSREDQMTPTLLHHVINSFSSPFQGTSFDHTFGGCAPKTTTAHAAGNNNSEALTRDFLGLTSLSHNDFLNIAAMGNCINNQTQNPWQG 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00379 411 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 325 - -
Cca10g00379 411 Gene3D Classic Zinc Finger 124 203 - -
Cca10g00379 411 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Cca10g00379 411 Gene3D Classic Zinc Finger 50 119 - -
Cca10g00379 411 MobiDBLite consensus disorder prediction 1 53 - -
Cca10g00379 411 SMART c2h2final6 147 167 IPR013087 -
Cca10g00379 411 SMART c2h2final6 112 142 IPR013087 -
Cca10g00379 411 SMART c2h2final6 71 93 IPR013087 -
Cca10g00379 411 MobiDBLite consensus disorder prediction 1 43 - -
Cca10g00379 411 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 3 325 - -
Cca10g00379 411 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Cca10g00379 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Cca10g00379 411 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00379 Cca-Chr10 4000679 4002865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00379 1 402 IDZ Gene Family AT1G55110 51.016 2.95e-128 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca10g00379 zf-C2H2_jaz 5.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00379 K25870 - gmx:100820609 592.808