Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00378 ATGTTGCAGATAAGTAGCAGTGCATCAAATTCTTTATTTATGACAATTGACATCATGGAGCGCTCTGTGGAAGCTTTGGAAAGAGATCTGAAGAGCGTGAGGAAGTACTATGGGAGTGGAAAAACAAAGGACGCGTCATGGAGAGAATCACAGCTCAAAGGGTTGCAAAATTTTATAGTGGAAAGAGAGGAAGAAATTGTGAGGGCCCTCAAGCATGATCTGGGGAAGCATTACGTCGAGGCTTTCAGAGATGAGGTTGGAACGTTAATGAAGACCTTAAACTTGGCAACCAAGTCGTTGAAAAAATGGATGGCGGCCAAAGAGGCCAAACTGCCACAGATAGCATTGCTTTCTAGTGCAGAGCTAGTTCCTGAGCCACTTGGTTTGGTTCTCATAATCTCATCATGGAACTTCCCTTTTGGACTATCCTTGGAGCCACTAATAGGAGCAGTAGCTGCTGGAAACACTGTGGTTTTAAAGCCTTCAGAGATGTCTCCTAGTTGCTCTTCTCTTTTGGCCACTGTTCTGCCAACTTACTTGGACAATAAGGCCATTAAGGTCATTGAAGGTGGGCCAGAAGTGGGGGAGCTACTGTTACAGCAAAAATGGGACAAGATTTTCTTCACAGGAAGTGCAAGGGTTGGGAGGATTGTTATGTCTGCAGCAGCTGTGCATCTAACACCAGTGACTTTGGAGTTAGGTGGAAAATGCCCAGCATTGGTTGATTCCCTTTCTTTTTCTTGGGACAGAGAGGTGGCTGCGAAGAGAATTTTGGTGGCAAAGTTTGGGGCTTGTGCAGGACAAGCATGCATTGCAATCGATTATATCCTTGTAGAGAAGGGTTTCAGTTCCAATTTGGTGTCATTAATGAAGGTCTGGATTAAGAAAATGTTTGGAGAAAACCCCAAAGAGTCCAACACTATTGCAAGGATAGTTAATAAAAAACAGTTCATGAGACTTAAGAATTTTCTCACTGAACCAAAGGTCAAAGAATCGGTGGTTGTAGGTGGATCAATGCACGAAAATGACTTATTTATTGAACCAACAATATTGCTGGATCCCCCACTTGATTCAGAAATCATGTCTGAGGAAATCTTTGGACCAGTGCTTCCAATTATCACCCTGGATAAGATTGAAGACAGTGTTGAGTTCATAAACTCAAGGCCTAAACCTTTAGCAATTTATGCCTTCACCAAAAACCAAACTCTGCAGAGAAGATTGCTATCTGAAACATCATCGGGAAGTCTTGTATTCAACGATGCAATTCTACAATACATAGCGGATACCCTACCATTTGGAGGAGTTGGTGAATGTGGATTTGGCAAGTACCATGGAAAGTTCTCCTTTGACTTGTTCAGTCACCACAAGGCTGTAGCTAGGAGAAGTTACTTTACTGATTTTTGGTTCAGGTTTCCTCCATGGACTCTTCAAAAGCTTCAACTACTTGAGGTGTCTTACAATTTAGACTACCTTGGAATACTTCTTGTTATCCTCGGCTTGAAGAGATCAAAACGATCATTATCTTAG 1527 0.4231 MLQISSSASNSLFMTIDIMERSVEALERDLKSVRKYYGSGKTKDASWRESQLKGLQNFIVEREEEIVRALKHDLGKHYVEAFRDEVGTLMKTLNLATKSLKKWMAAKEAKLPQIALLSSAELVPEPLGLVLIISSWNFPFGLSLEPLIGAVAAGNTVVLKPSEMSPSCSSLLATVLPTYLDNKAIKVIEGGPEVGELLLQQKWDKIFFTGSARVGRIVMSAAAVHLTPVTLELGGKCPALVDSLSFSWDREVAAKRILVAKFGACAGQACIAIDYILVEKGFSSNLVSLMKVWIKKMFGENPKESNTIARIVNKKQFMRLKNFLTEPKVKESVVVGGSMHENDLFIEPTILLDPPLDSEIMSEEIFGPVLPIITLDKIEDSVEFINSRPKPLAIYAFTKNQTLQRRLLSETSSGSLVFNDAILQYIADTLPFGGVGECGFGKYHGKFSFDLFSHHKAVARRSYFTDFWFRFPPWTLQKLQLLEVSYNLDYLGILLVILGLKRSKRSLS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00378 508 PANTHER ALDEHYDE DEHYDROGENASE 24 507 - -
Cca10g00378 508 PIRSF ALDH 7 494 IPR012394 GO:0006081
Cca10g00378 508 Coils Coil 16 36 - -
Cca10g00378 508 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 34 456 IPR016162 GO:0016491
Cca10g00378 508 PANTHER ALDEHYDE DEHYDROGENASE 24 507 IPR012394 GO:0006081
Cca10g00378 508 Pfam Aldehyde dehydrogenase family 23 458 IPR015590 GO:0016491
Cca10g00378 508 SUPERFAMILY ALDH-like 30 474 IPR016161 GO:0016491
Cca10g00378 508 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 235 438 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00378 Cca-Chr10 3988427 3991812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00378 19 502 Aldehyde Dehydrogenase Gene Family AT4G36250 53.719 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00378 K00128 - gmx:100819197 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00378 10 3988427 3991812 Cca10g00378 10 3988427 3991812 ECH
Cca10g00378 10 3988427 3991812 Cca04g00574 04 5782406 5785153 PCT