Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00377 ATGGCTGCAGCAACTCCTTCCAAGTCTTTTCAAACTCCCTccaaacccaatctacgatcccaatccaatctcaaATCTTCGCCTGTTCTAACCCCCCTCACACCACAAACCCTACATCTCCGCAGATCCGTGCGCGCCAAGTCCCTCCTCTTCGATTCCCCTAAACCTCCGCATGCACCTTGTGAAGTCTCACTCACAACCCCTAAGCGGAAGACTCGACGATCGATTGATTATGTCGAAGAGGATTGCAGCAAAAACAAAGCCACAACCCGCACAGTTCCATCCGTTAATGCAGCGAAGAAGAAGAGTGGGAAGCGTTCAATTGAAACTTCCTTGGCTCCGGTAACGCCGGTTTCATCGGCgaaggggaagaggaagagggagggtgaggagagTGTTGTCACCAGAGCTAAAAGGGGAAAACCAGAGAATCGGAAAGGGAGTGCGAAATTGCCTGGGAGGCGTGTGCATTATAAAAAAGTGGTTTACGATGGAGGCGAATTTGAATTGGGTGATGATGTGTATGTGAAAAGGAGAGAAGATGCTACCTCAGATGCTGAAGATCCGGAAATGGAAGAGTGCAGGATGTGTTTTTTCTCAAATGATGAGGTGATGATTGAGTGTGACGATTGTTTGGGTGGGTTTCATTTGAAATGCTTGAAGCCACCGTTGAAGGATGTTCCTGAAGGGGATTGGATATGTGGGTTTTGTGAGGCTCTTAAGATGGGTAAGGAAGTTCAGTTTCCAAAGCCTCCCAAGGGTAAAAAATTGGTTAGAACTATGAGGGAGAAGCTTCTTTCCAGTGATTTGTGGGCTGCGCATATTGAAAGCATATGGAAAGAAGTGGATGGCAACTACTGGTGTCGGGTGCGGTGGTATACAATTCCAGAAGAGACTTCTGTTGGGAGGCAACCACATACTCTTAAAAGGGAGTTATATCGAACTAATGATTTTGCGGACATTGAGATGGAATCTGTTCTTAGACATTGCTATGTCATGACCCCAAAAGAATATGCTAAAGCTAGCAATGAGGGAGATGATGTTTTTTTATGTGAATATGAATATGACATCCAGTGGCACAGTTTCAAACGGCTCGCTGATATTGACAATGAAAGAGAGAATGACGAAGGGACTGACAGTGACGAAGACTGGAATCTTGACAAGGAACCAGACTCTGATACAGATGAAGATGTTGAATATGAAGAGGAAAATATTAAAAGTGCACAATCTCAGCCATTAACAAGCCATCAGTTAGCTGCTAATCTGCACAAGGGACGGTTCTTTGGGCTTCAGAAGATAGGTGCAAAAAGAATTCCACAGCATGTAAGGTGTCACAAACAGACTGATCTTGAAAGAGCAAAGGCTACACTGCTGTTAGCATCGCTGCCAAAATCTTTACCTTGTAGAAATAAAGAAATGGAGGAGATAACTGCATTCATTAAAGGTGCTATTTCTGACGATCAATGTCTGGGGCGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAGACAATGAGTGTACTATCAGTAATGAGGAGTTTGAAGTCAGAAGTTGATGCAGGGAACATCCAACCATACACTTTTGTGGAGATTAATGGTCTGAAATTGGCAACACCAGAAAATATTTATAGGGTCATATATGAGGCATTAAATGGACATAGGGTCAGCTGGAAAAAGGCTCTCCACTTGCTAAATGAGAGATTTGTAGAAGGAAAGAAAACCAGAGAAGAGGCTGACCGGCCATGTATTTTACTTATTGATGAACTTGATCTTCTAGTAACCAGAAACCAGTCGGTTCTGTACAATATTCTTGACTGGCCTACTAAGCCACATTCCAAGCTAATTGTCATAGGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTCCCTCGTATATCAAGCCGAATGGGCATACACAGGCTTTGCTTTGGCCCATATAATTATCAACAGCTTCAAGAAATCATTTCAAGTCGCCTCAAGGGGCTTGATGTATTTGAAAAGCAAGCTATAGAATTTGCTTCAAGAAAGGTTGCGGCAATCTCAGGAGATGCACGTCGTGCTTTGGAGATATGCAGACGTGCAGCTGAAATAGCAGATTATCGTATGAAGCTAATTTCAAATCCTGATTTTTCTACTTCGGGAAAAGGACTTGTTGGTATGGTAGACGTTGAAGCAGCCATTCAAGAAATGTTTCAAGCACCTCATATTCAAATGATGAAAAGCTGTTCCAGGCTCAGCAAAATTTTCCTGACAGCCATGGTGCACGAGCTTTATAAAACCGGAATGGGGGAAACCACTTTTGAAAAGTTGGCTATGACGGTTTCACGTCTCTGTACCAGCAACGGAGAAGTGTTTTCTGGATATGATACTCTCCTGCGAGTTGGCTGTAAGCTGGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCACAGGTTGCAGAAATTGCAGCTTAATTTCCCGAGTGATGACGTGGCATTTGCGCTGAGAGACTGCAAAGATGTAACTTGGTTGTCAAAGTATCTGAATTAG 2541 0.4231 MAAATPSKSFQTPSKPNLRSQSNLKSSPVLTPLTPQTLHLRRSVRAKSLLFDSPKPPHAPCEVSLTTPKRKTRRSIDYVEEDCSKNKATTRTVPSVNAAKKKSGKRSIETSLAPVTPVSSAKGKRKREGEESVVTRAKRGKPENRKGSAKLPGRRVHYKKVVYDGGEFELGDDVYVKRREDATSDAEDPEMEECRMCFFSNDEVMIECDDCLGGFHLKCLKPPLKDVPEGDWICGFCEALKMGKEVQFPKPPKGKKLVRTMREKLLSSDLWAAHIESIWKEVDGNYWCRVRWYTIPEETSVGRQPHTLKRELYRTNDFADIEMESVLRHCYVMTPKEYAKASNEGDDVFLCEYEYDIQWHSFKRLADIDNERENDEGTDSDEDWNLDKEPDSDTDEDVEYEEENIKSAQSQPLTSHQLAANLHKGRFFGLQKIGAKRIPQHVRCHKQTDLERAKATLLLASLPKSLPCRNKEMEEITAFIKGAISDDQCLGRCLYIHGVPGTGKTMSVLSVMRSLKSEVDAGNIQPYTFVEINGLKLATPENIYRVIYEALNGHRVSWKKALHLLNERFVEGKKTREEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIHRLCFGPYNYQQLQEIISSRLKGLDVFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRMKLISNPDFSTSGKGLVGMVDVEAAIQEMFQAPHIQMMKSCSRLSKIFLTAMVHELYKTGMGETTFEKLAMTVSRLCTSNGEVFSGYDTLLRVGCKLGECRIILCEAGAKHRLQKLQLNFPSDDVAFALRDCKDVTWLSKYLN 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00377 846 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 128 841 IPR020793 -
Cca10g00377 846 SMART BAH_4 225 366 IPR001025 GO:0003682
Cca10g00377 846 SMART AAA_5 490 644 IPR003593 -
Cca10g00377 846 MobiDBLite consensus disorder prediction 95 150 - -
Cca10g00377 846 MobiDBLite consensus disorder prediction 121 150 - -
Cca10g00377 846 Pfam AAA lid domain 668 701 IPR041083 -
Cca10g00377 846 Pfam PHD-finger 194 238 IPR019787 -
Cca10g00377 846 ProSiteProfiles Zinc finger PHD-type profile. 191 240 IPR019787 -
Cca10g00377 846 MobiDBLite consensus disorder prediction 1 38 - -
Cca10g00377 846 Gene3D - 258 448 IPR043151 -
Cca10g00377 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 248 IPR013083 -
Cca10g00377 846 Pfam BAH domain 274 364 IPR001025 GO:0003682
Cca10g00377 846 ProSitePatterns Zinc finger PHD-type signature. 194 237 IPR019786 -
Cca10g00377 846 MobiDBLite consensus disorder prediction 372 398 - -
Cca10g00377 846 MobiDBLite consensus disorder prediction 1 73 - -
Cca10g00377 846 CDD AAA 471 647 - -
Cca10g00377 846 Gene3D - 449 643 IPR027417 -
Cca10g00377 846 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 128 841 - -
Cca10g00377 846 ProSiteProfiles BAH domain profile. 238 366 IPR001025 GO:0003682
Cca10g00377 846 SMART PHD_3 193 238 IPR001965 -
Cca10g00377 846 Gene3D - 644 734 - -
Cca10g00377 846 SUPERFAMILY FYVE/PHD zinc finger 182 243 IPR011011 -
Cca10g00377 846 Pfam ATPase family associated with various cellular activities (AAA) 495 640 IPR003959 GO:0005524|GO:0016887
Cca10g00377 846 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 702 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00377 1 845 Core DNA Replication Machinery Family AT4G14700 61.601 0.0 1017
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca10g00377 AAA 3.9e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00377 K02603 - gmx:100798547 1494.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00377 10 3977807 3984945 Cca10g00377 10 3977807 3984945 ECH