Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00370 ATGGCCACAGTACGTATAGAAAGAGAAGAAGAAGTAAACAATGCCACACGAGACAGTTCTATTGAATGTCCACGAAGACATCATCATAATTCCAATAATTATCAGGTCCTTTGGGAAGACAATATTGATCCTGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAGTCAGTTGGAACTCAGAGCCGCGGTCTCTCCCAAGAACAGATCTCATTGCTTCCAGTTAAGAAGTACAAGTGTGGCTGGTTCTTCTTCAGGAAGAAGTCACGGGACGAGAGATGCGTAATTTGCCAGATGGAATATAAAAGAGGGGAGAAGAGGATTACTTTACCATGTAAACATGTCTATCATGCTAGCTGTGGGAACAAATGGCTTAGCATCAACAAGGCTTGCCCGATGTGTTACACGGAGGTGTTAGCCGACGAGTCAAAACACAAATCATCATCTTCGAGTGAAGAGAAGTAA 468 0.4274 MATVRIEREEEVNNATRDSSIECPRRHHHNSNNYQVLWEDNIDPDNMTYEELLELGESVGTQSRGLSQEQISLLPVKKYKCGWFFFRKKSRDERCVICQMEYKRGEKRITLPCKHVYHASCGNKWLSINKACPMCYTEVLADESKHKSSSSSEEK 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00370 155 SMART ring_2 95 135 IPR001841 -
Cca10g00370 155 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 145 - -
Cca10g00370 155 SUPERFAMILY RING/U-box 94 142 - -
Cca10g00370 155 MobiDBLite consensus disorder prediction 1 26 - -
Cca10g00370 155 ProSiteProfiles Zinc finger RING-type profile. 95 135 IPR001841 -
Cca10g00370 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 141 IPR013083 -
Cca10g00370 155 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 145 IPR033276 GO:0004842|GO:0016567|GO:0046621
Cca10g00370 155 Pfam Ring finger domain 94 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00370 Cca-Chr10 3883768 3889153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00370 6 146 C3H Transcription Factor Family AT3G63530 54.610 3.01e-51 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00370 K19045 - gmx:100805963 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00370 10 3883768 3889153 Cca10g00370 10 3883768 3889153 ECH
Cca10g00370 10 3883768 3889153 Cca04g00569 04 5721923 5726035 ECH
Cca10g00370 10 3883768 3889153 Cca04g00569 04 5721923 5726035 PCT