Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00369 ATGACCGCTACTCAAGAACTGATGGTTGATAGGCAACAGTACCCTACAATCCAAGAAAAGTTTGCTGGCCAGCTTCACTTGAGACACAACCTTCCCTCACATGCTGCAACTTGTTCCGGAGGATTGAAAAGGTCACCTCTCTGTCAGCAACAATTTTCATTGAAAAATTATTCAAATGCAAGGTTGCAGTGGCCTGTCATGCATTCTGTAGGCTCAGCTGCTTCACCAGTGTTTGTTCCATCCCCGTCGGAGAAAAACTTCTCAAGCTTTGCCACTGATTTTCTCATGGGTGGTGTTTCTGCAGCAGTGTCCAAGACTGCAGCTGCTCCTATTGAGCGTGTAAAGCTTCTGATTCAAAATCAAGATGAGATGATCAAGGCTGGTCGGCTCTCTGAACCCTACAAGGGCATTGGAGATTGCTTTGGCAGAACAATCAAAGATGAGGGGTTTGTTTCACTGTGGAGAGGGAACACTGTCAATGTTATCCGTTACTTCCCAACACAGGCTCTGAACTTTGCATTCAAGGACCACTTTAAGAGGCTATTTAACTTCAAGAAAGACAAGGATGGGTATTGGAAATGGTTTGCAGGGAACATAGCATCTGGTGCCGCAGCAGGAGCTTCATCCTCCATATTTGTTTATTCATTGGATTACGCTCGAACTCGTCTCACCAATGATGCCAAGGCTGTAAAAAAGGGTGGAGAGAGGCAATTCAATGGTTTGGTGGATGTCTACAGGAAGACTCTTCAATCAGACGGAATTGTTGGCCTCTACCGTGGCTTCAATGTTTCTATTGTCGGAATCATTGTCTACCGTGGTTTGTACTTTGGAATGTATGATTCTCTCAAACCAGTGCTCTTGGTGGGAACTTTGCAGGATAGCTTCTTTGCTAGCTTTGCTCTGGGGTGGCTCGTTACCACTGGTGCTAACCTTGTCTCTTATCCCTTAGATACTGTTCGTAGAAGAATGATGATGACATCAGGTGAAGCTGTTAAGTACAAGAGCTCTTTCCATGCATTCTCTCAAATTGTGAAGAATGAAGGTTCAAAATCTCTCTTCAAAGGCGCTGGCGCAAATATTCTTCGTGCTGTTGCGGGTGCTGGTGTGCTTGCAGGCTACGACAAACTTCAGGTTCTTGTCATGGAAAAGAAGTATGGTTCCGGTGGGGCTTAA 1173 0.4527 MTATQELMVDRQQYPTIQEKFAGQLHLRHNLPSHAATCSGGLKRSPLCQQQFSLKNYSNARLQWPVMHSVGSAASPVFVPSPSEKNFSSFATDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKDEGFVSLWRGNTVNVIRYFPTQALNFAFKDHFKRLFNFKKDKDGYWKWFAGNIASGAAAGASSSIFVYSLDYARTRLTNDAKAVKKGGERQFNGLVDVYRKTLQSDGIVGLYRGFNVSIVGIIVYRGLYFGMYDSLKPVLLVGTLQDSFFASFALGWLVTTGANLVSYPLDTVRRRMMMTSGEAVKYKSSFHAFSQIVKNEGSKSLFKGAGANILRAVAGAGVLAGYDKLQVLVMEKKYGSGGA 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00369 390 Pfam Mitochondrial carrier protein 89 185 IPR018108 -
Cca10g00369 390 Pfam Mitochondrial carrier protein 294 383 IPR018108 -
Cca10g00369 390 Pfam Mitochondrial carrier protein 192 286 IPR018108 -
Cca10g00369 390 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 8 390 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca10g00369 390 PRINTS Mitochondrial carrier protein signature 93 106 IPR002067 GO:0055085
Cca10g00369 390 PRINTS Mitochondrial carrier protein signature 106 120 IPR002067 GO:0055085
Cca10g00369 390 PRINTS Mitochondrial carrier protein signature 156 176 IPR002067 GO:0055085
Cca10g00369 390 PRINTS Mitochondrial carrier protein signature 208 226 IPR002067 GO:0055085
Cca10g00369 390 PRINTS Mitochondrial carrier protein signature 258 276 IPR002067 GO:0055085
Cca10g00369 390 PRINTS Mitochondrial carrier protein signature 302 324 IPR002067 GO:0055085
Cca10g00369 390 ProSiteProfiles Solute carrier (Solcar) repeat profile. 193 285 IPR018108 -
Cca10g00369 390 ProSiteProfiles Solute carrier (Solcar) repeat profile. 88 181 IPR018108 -
Cca10g00369 390 ProSiteProfiles Solute carrier (Solcar) repeat profile. 293 379 IPR018108 -
Cca10g00369 390 SUPERFAMILY Mitochondrial carrier 86 375 IPR023395 -
Cca10g00369 390 Gene3D Mitochondrial carrier domain 91 386 IPR023395 -
Cca10g00369 390 PANTHER ADP,ATP CARRIER PROTEIN, MITOCHONDRIAL 8 390 - -
Cca10g00369 390 PRINTS Adenine nucleotide translocator signature 90 102 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca10g00369 390 PRINTS Adenine nucleotide translocator signature 134 155 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca10g00369 390 PRINTS Adenine nucleotide translocator signature 167 179 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca10g00369 390 PRINTS Adenine nucleotide translocator signature 193 206 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca10g00369 390 PRINTS Adenine nucleotide translocator signature 298 314 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00369 Cca-Chr10 3878525 3881229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00369 8 390 Antiporters AT5G13490 75.389 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00369 K05863 - gmx:100800843 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00369 10 3878525 3881229 Cca10g00369 10 3878525 3881229 ECH