Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00368 ATGAATAGTTCGGGTTTAGGTGGTGGTTTTCTGTCTGGTCCCAATGGGGGGATTTTGGACTTGGAATCTCCATTTCATAGACACCAACAGACTCAATTGGGCCATCCATCAATAGCTGGTCAACAGCACATGAATATGATGGGTGGTCTCGAAAATGATCACCCCATTGGCTTGATTGAAGTGAAAAGTTTGAATGCGGCGTTGAATTTTGGTAAAGGGAAGGCAATTGCTCCTTCTAATCCTGCCAACAGTAATGAGTTGAGCGAGGATGATGAGCCTAGCTATGCAGAAGAAGGGAATTGTGAGAACCTGGACGGTGGGAAGAGCAAGAAGGGATCTCCTTGGCAGCGAATGAAGTGGACAGACAATGTGGTTAGGCTTCTCATAACAGTGGTGAGTTGTGTGGGTGATGATGGCACAATTGGTGGCATGGATGGTCATAAAAGGAAATCAGGGGTTTTACAAAAGAAGGGCAAGTGGAAAACGGTCTCCAGGATAATGATAGGCAAGGGTTGCCATGTATCACCGCAGCAGTGTGAGGACAAGTTCAATGACTTAAATAAGAGATACAAGAGGTTAAATGACATACTTGGAAGGGGAACTTGTTGTCAAGTGGTTGAGAATCCTGTGCTGATGGATTCAATGCCTAACTTGTCAGCTAAGATGAAGGATGATGTTAGGAAGATATTGAGCTCAAAACACTTGTTTTATAAGGAGATGTGTGCCTACCATAATGGGCAAAGAATACCAAATAGCCATGATCTCGACTTGCAAGGTTATTCTATGGAGCATGGGAGGGACTCGAGAGATAATAATGGATCtgaggacgaagatgaggataacaatgaaaccgatgatgatgagttggatgatgaAATTAATGTTAATGCACACGAGGATGGAGGGAGGATGCAGGAGCTCTGTGATAGAAATAAATTAATTGAGGAGGATGGCCATTTTGGCCCACAAACTTCTCGGATGGATAAATTCGAGGTTGAAATGGCAAGGGTTTTTCAAGACCCCACAAAGTCATCACGGGAACGAAGAGAGTGGATTAAGATCCAGATGTTGCAGCTTCAAGAGCAAAATATCAGCTACCAAGCCCAAGCATTTGAACTTGAGAAACAACGGCTTAAGTGGTTAAGATACTGCAGCAAGAAGGACAGGGAGCTGGAGAGGATGCGGTTGGAGAACAAAAGAATGAAATTGGAAAACGAGCGCAGGATCTTGAAACTGAAGCAGAAGGAGCTCGAGACAGATTTCAGTACATCTGAGATGTCTTTAGACCCTGCCTCTCTTGGAATCAACCGGCCACAACCACAAGGGAGAGAACCTATCAGCTTAGGCAGACAACAGTAG 1359 0.4275 MNSSGLGGGFLSGPNGGILDLESPFHRHQQTQLGHPSIAGQQHMNMMGGLENDHPIGLIEVKSLNAALNFGKGKAIAPSNPANSNELSEDDEPSYAEEGNCENLDGGKSKKGSPWQRMKWTDNVVRLLITVVSCVGDDGTIGGMDGHKRKSGVLQKKGKWKTVSRIMIGKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTCCQVVENPVLMDSMPNLSAKMKDDVRKILSSKHLFYKEMCAYHNGQRIPNSHDLDLQGYSMEHGRDSRDNNGSEDEDEDNNETDDDELDDEINVNAHEDGGRMQELCDRNKLIEEDGHFGPQTSRMDKFEVEMARVFQDPTKSSRERREWIKIQMLQLQEQNISYQAQAFELEKQRLKWLRYCSKKDRELERMRLENKRMKLENERRILKLKQKELETDFSTSEMSLDPASLGINRPQPQGREPISLGRQQ 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00368 452 MobiDBLite consensus disorder prediction 75 115 - -
Cca10g00368 452 Pfam Myb/SANT-like DNA-binding domain 117 242 IPR044822 -
Cca10g00368 452 PANTHER F16F4.11 PROTEIN-RELATED 12 424 - -
Cca10g00368 452 MobiDBLite consensus disorder prediction 252 291 - -
Cca10g00368 452 Gene3D - 120 192 - -
Cca10g00368 452 Coils Coil 384 420 - -
Cca10g00368 452 MobiDBLite consensus disorder prediction 419 452 - -
Cca10g00368 452 Coils Coil 356 376 - -
Cca10g00368 452 MobiDBLite consensus disorder prediction 273 291 - -
Cca10g00368 452 PANTHER TRANSCRIPTION FACTOR TRIHELIX FAMILY-RELATED 12 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00368 Cca-Chr10 3875182 3877745 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca10g00368 Myb_DNA-bind_4 5.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00368 - - ccaj:109806698 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00368 10 3875182 3877745 Cca10g00368 10 3875182 3877745 ECH