Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00366 ATGACTCATCCCTACTGCTCCAATGACTTCAATGCTTGGTTTGACCTCAATTCTCCATGCCTTTTCTCTTCTTCTTCATCACCCTGCTATTTTCCTTCCACAACTTATCATCATCATAGCTTCACAAGTGGCATCTCTTTCACTCAACACCAATCTTCTCCCTCCTCTCACCCTCCAAAAGAAGCCCTTCCTCTCCTTAACCTAAGCCCTCCAAGAGGTGAAGATCTTGAATCTTCATTTAGTGCCATGAAAGTGAACAACAACATGAAGGAGAAAGAACTAAGCATCATGTCATCTAATGATAACTCTATGGATGATGACACTGTGACGGTGGCTTTGCACTTAGGGCTTCCAAGCACTACTTCAGCTGATTTAACTTCAAATTTATACTCCACTGAGATTTCAGACAAAGAAGAAAAAGCCACGGTTGCTTCTGAGTATTCGCCTGGTAGAATTAACAAGGGTCAGTATTGGATCCCTACCCCAGCTCAAATTCTGATCGGTCCAACACAGTTTTCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGGAAGGGGCCTGAGTCTCTAAGAGGAACACAGCCAACAGCAATGCTTAGACTCCCTTGCTATTGTTGTGCACCTGGATGCAAGAACAACATTGACCATCCAAGAGCAAAGCCACTCAAAGATTTTAGGACCCTTCAAACACATTACAAGAGAAAGCATGGAATCAAGCCCTTCATGTGTAGAAAATGTTGCAAAGCCTTTGCTGTGAGAGGTGACTGGAGAACTCACGAGAAGAACTGTGGGAAGCTTTGGTATTGCTCTTGTGGATCTGATTTTAAGCACAAGAGATCCCTTAAGGATCATATTAAAGCATTTGGGAATGGACATAGAGCTTGTGGAATCGATCATTGTCTTGATCAAGATGATGAAGCGGGGTCTGAAATTGAGCAAGAGAATGAATCTTTAATTTCTAGTCATAGTTGA 1017 0.4258 MTHPYCSNDFNAWFDLNSPCLFSSSSSPCYFPSTTYHHHSFTSGISFTQHQSSPSSHPPKEALPLLNLSPPRGEDLESSFSAMKVNNNMKEKELSIMSSNDNSMDDDTVTVALHLGLPSTTSADLTSNLYSTEISDKEEKATVASEYSPGRINKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHRACGIDHCLDQDDEAGSEIEQENESLISSHS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00366 338 PANTHER ZINC FINGER PROTEIN WIP2 1 332 IPR043584 GO:0003700|GO:0010468
Cca10g00366 338 SUPERFAMILY beta-beta-alpha zinc fingers 238 276 IPR036236 -
Cca10g00366 338 MobiDBLite consensus disorder prediction 47 67 - -
Cca10g00366 338 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 332 - -
Cca10g00366 338 Gene3D Classic Zinc Finger 171 194 - -
Cca10g00366 338 ProSiteProfiles Zinc finger C2H2 type domain profile. 172 199 IPR013087 -
Cca10g00366 338 ProSitePatterns Zinc finger C2H2 type domain signature. 174 194 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00366 Cca-Chr10 3854408 3856690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00366 1 328 C2H2 Transcription Factor Family AT1G51220 58.571 1.06e-130 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca10g00366 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00366 - - gmx:100801922 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00366 10 3854408 3856690 Cca10g00366 10 3854408 3856690 ECH
Cca10g00366 10 3854408 3856690 Cca04g00568 04 5701247 5703785 ECH
Cca02g00800 02 21646586 21649311 Cca10g00366 10 3854408 3856690 ECH
Cca03g01986 03 39856311 39859153 Cca10g00366 10 3854408 3856690 ECH
Cca10g00366 10 3854408 3856690 Cca04g00568 04 5701247 5703785 PCT