Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00361 ATGGGGGAGGAGTTGGACCTAAACAACCTAAAAGCATTGAAAGTGTTAGGCAAAGGAGCCATGGGCACGGTGTTCCTCGTCCAACACAAAAACAGCCACGTGGCAGTGAAAGTGGTGGACAAGTCAAGCTGCCTCCACGACGCACCCCGCCGAGCACGCTGGGAAATCAACGTCCTATCACGTTTATCCCACCCTTTCCTTCCCTCCTTATTGGGCTCATTCGAGTTCCAAAATCTAATGGGCTGGGCCCTCCCATACTGCCCCGGCGGCGATCTCAACGTCCTCCGCTACCGCCAAACCGACCACGTCTTCTCCCCCGCTGTCATCCGCTTTTACGTCGCCGAGATCCTCTCCGCCCTCCACCACCTCCACTCCATCGGCATCGCCTACCGCGACCTCAAACCCGAAAACGTCCTCGTCCAGCAATCCGGCCACGTCACCCTCACCGACTTCGACCTCTCCCGAACCCTCACTCCCAAAACTATCAAAAGCCCCACACCGAATAATCACACACCCAAAACAGACTATATAACCAACGTTACGGGGCCTAAAACGTCGTTCAACAAAACCCGCCGCAACTTCCTCTGGAAGACTAACACTAACACAACCTCCAAGTGCGCCCGCGTCAGCCCCGTCACTCGCCGCAAGCCCAGCTTTTGCGACGGCGAGCGATCCAACTCGTTTGTCGGCACCGAGGAGTACGTGGCGCCGGAGGTGGTGCGCGGCGACGGGCACGAGTTTGCCGTGGACTGGTGGGCCCTGGGGGTTCTCACCTACGAGATGCTCTACGGGACGACGCCGTTCAAGGGGAAGAACCGCAAGGAAACGTTCCGAAACGTGCTTCTGAAGCCGCCGGAGTTCGTGGGGAGGAAGACGGCGCTGACGGACCTCATTGAACGGTTGCTTCAAAAGGACCCCACCGCGCGTTTGGGTTACGTTCGCGGCGCTACCGAGATCATGGAGCACGAGTTCTTCAGAGGGGTCAGGTGGGACCTACTAACGGAGGTCATGCGCCCGCCGTTTATTCCGTCCCGGGACGACGTTGACCCTTTCGCCGCTGGACTCGACATAAGGGGCTACTTTCAGAGATTGAAATCTCCGCCGTCGCCGTTACCGTCACCGTCACCGTCCTTTGATGAGTTTCAGAAAAATGTTTCTTTGCCGGAATTCTGA 1173 0.5772 MGEELDLNNLKALKVLGKGAMGTVFLVQHKNSHVAVKVVDKSSCLHDAPRRARWEINVLSRLSHPFLPSLLGSFEFQNLMGWALPYCPGGDLNVLRYRQTDHVFSPAVIRFYVAEILSALHHLHSIGIAYRDLKPENVLVQQSGHVTLTDFDLSRTLTPKTIKSPTPNNHTPKTDYITNVTGPKTSFNKTRRNFLWKTNTNTTSKCARVSPVTRRKPSFCDGERSNSFVGTEEYVAPEVVRGDGHEFAVDWWALGVLTYEMLYGTTPFKGKNRKETFRNVLLKPPEFVGRKTALTDLIERLLQKDPTARLGYVRGATEIMEHEFFRGVRWDLLTEVMRPPFIPSRDDVDPFAAGLDIRGYFQRLKSPPSPLPSPSPSFDEFQKNVSLPEF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00361 390 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 5 369 - -
Cca10g00361 390 MobiDBLite consensus disorder prediction 365 390 - -
Cca10g00361 390 Gene3D Transferase(Phosphotransferase) domain 1 4 177 - -
Cca10g00361 390 ProSiteProfiles Protein kinase domain profile. 10 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00361 390 Pfam Protein kinase domain 12 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00361 390 Pfam Protein kinase domain 223 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00361 390 SMART serkin_6 10 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00361 390 SUPERFAMILY Protein kinase-like (PK-like) 7 376 IPR011009 -
Cca10g00361 390 Gene3D Transferase(Phosphotransferase) domain 1 221 346 - -
Cca10g00361 390 ProSitePatterns Protein kinases ATP-binding region signature. 16 37 IPR017441 GO:0005524
Cca10g00361 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Cca10g00361 390 PANTHER FLIPPASE KINASE 1-RELATED 5 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00361 Cca-Chr10 3818401 3820010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00361 3 374 AGC Kinase Gene Family AT3G20830 60.411 5.72e-153 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Cca10g00361 Pkinase 8.8e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00361 - K08286 gmx:100802613 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00361 10 3818401 3820010 Cca10g00361 10 3818401 3820010 ECH
Cca10g00361 10 3818401 3820010 Cca04g00562 04 5626540 5628067 PCT