Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00358 ATGGATTCTTCTGCTGTTGTGGGTAGCACAATTTTGGAGCCTCATAATGATatggaatttgaatctcatgaagctgcatattctttttacaaagactatgctaagtctgcagggtttggGACTGCTAAGTTGAGCAGTCGGCGGTCTAGGGCATCAAAAGAATTTATTGATGCGAAATTTTCATGTATAAGATATGGTAATAAGCAGCAATCTGATGATGCAATTAATCCACGCCCTTCTCCAAAAATTGGTTGTAAAGCAAGCATGCATGTGAAGAGAAGGCAGGATGGTAAATGGTATGTCTATAGCTTTGTGAAGGAGCATAATCATGAGCTGTTACCTGCTCAAGCTCATTTTTTTAGGAGTCACAGGAGTTCTGATCCACTAAGTAATGATGTTCGTATGCGAAGGCGGAAAAACTCAAATGCAGTTTCTAAATTATTTACCGCATATCagaatgttgattgcttagagatctttgtgaaacatcaacaagataaaggacgaagtttggttttagaagcagggcatgcccaattgcttcttgaactcttcatgcacatgcaggaagagaatccaaaattcttctatgccgttgatttgaatgaagagcatcgactgagaaatgtgttctgggttgatgctaaaggcttggaagattttgcttacttttctgatgttatttcttttgacacaacatatttttctagcaaatataaaataccattggtacttttcattggagtaaaccatcatattcaaccgacattgcttggttgtgcattgattgctgacgagacaatatatacatttgcctggttactgcaaacatggttaatagcaatgggagaacgagctccacaagtgattctcactgaccaaaatgaggctattaaagcagctgttgctacttttcttccaggaacacgtcattgtttttgtttgtggcaaattttggaaaagataccaaaacaactagaatttttaggtgcatggcatgatagctttatggaaaaatttaacaaatgtatatataaatcatggacagatgagcaatttgaaAAGAGATGGTGGAAGTTGGTTGATAAGTTTGACCTTAGAGATGTTGAGTGGGTTCGATCCTTATACAATGACCGTACCTATTGGGTGCCAACTTTTATGAAAAATATTTCTTTTGCTGGCTTGTCTACTAGTTCACGCCAAGAAAGTTTAAATTATATGTTTGACAGCTATATCCAAGTTGATACTTCTTTGAGAGAATTTATAGAACGGTATAAAGTGATTCTTGAAGACAGCCATGAAGAGGAAGCCAAAGCAAATTTTGATGCTTGGCATGAAACACCTGAATTGAAGTCTCCTTCCCCTTTTGAAAAACAACTGTTGTCAGTCTACACACATGAAATTTTTAGAAAGTTCCAGGTTGAGGTTTTGGGTGCAGCTGCTTGCCATCTCAAGAAAGAAAATGATGGTGTGACAACTACTTATACTGTGAAAGACTTTGAAAATAATCAAAACTATACAGTAGAATGGAACACAACAAGCTCAGATATATGTTGTTCAtgtcacttgtttgaatataaaggttatctctgtagacatgctattgttgttctacaaatgtctggtgttttcagtattccaccaaagtatatattgcaaagatggacaaatgctgcTTTGAGCAGGCATCCTATTGGTGAAAAATTGGAAGAGGTTCAAACAAAGGTGCGGCGATTTAATGATTTATGTAGACGGGCCATAATATTAGGTGAAGAAGGTTCTTTGTCACAAGAAAGTTACTATATTGCTTTAGGTGCCATTAGTGAAGCGCTAAAGCAATGTGCAAATTTGAACAACTCTGTTGAGAATGGTATGAGACCTGATGCCTCAGGTACCAATGTTGTAGAAGAATATCAATCTATTATTGCGTCTAACAATAAGGCACCTGATCCAAAAATGAATACGGGAAAGAAAGCTGTGAGGAGTGGTGTAGCTGGTAGGAGTCTAGGAAGTGTTGAAAACAGTGAAGGAAATAAGGGAAAGGTATCTCAGGTCGAAGCAGTGAGCGGCAAAGATGATTTTCAAGAAATGGAGGCAACTGATCTGAGATCACACAACGTCATGCCAATGCAGTTTCACAGTGTGGTACCCACTCTATTCCATAATGTTTCGTCATCATTTCATACTGCACCTTCAACACATTTGCACGAGAATCGTCTTCCTCGTTAG 2229 0.2521 MDSSAVVGSTILEPHNDMEFESHEAAYSFYKDYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLPAQAHFFRSHRSSDPLSNDVRMRRRKNSNAVSKLFTAYQNVDCLEIFVKHQQDKGRSLVLEAGHAQLLLELFMHMQEENPKFFYAVDLNEEHRLRNVFWVDAKGLEDFAYFSDVISFDTTYFSSKYKIPLVLFIGVNHHIQPTLLGCALIADETIYTFAWLLQTWLIAMGERAPQVILTDQNEAIKAAVATFLPGTRHCFCLWQILEKIPKQLEFLGAWHDSFMEKFNKCIYKSWTDEQFEKRWWKLVDKFDLRDVEWVRSLYNDRTYWVPTFMKNISFAGLSTSSRQESLNYMFDSYIQVDTSLREFIERYKVILEDSHEEEAKANFDAWHETPELKSPSPFEKQLLSVYTHEIFRKFQVEVLGAAACHLKKENDGVTTTYTVKDFENNQNYTVEWNTTSSDICCSCHLFEYKGYLCRHAIVVLQMSGVFSIPPKYILQRWTNAALSRHPIGEKLEEVQTKVRRFNDLCRRAIILGEEGSLSQESYYIALGAISEALKQCANLNNSVENGMRPDASGTNVVEEYQSIIASNNKAPDPKMNTGKKAVRSGVAGRSLGSVENSEGNKGKVSQVEAVSGKDDFQEMEATDLRSHNVMPMQFHSVVPTLFHNVSSSFHTAPSTHLHENRLPR 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00358 742 MobiDBLite consensus disorder prediction 668 682 - -
Cca10g00358 742 SMART 26again6 517 544 IPR006564 GO:0008270
Cca10g00358 742 Pfam MULE transposase domain 227 320 IPR018289 -
Cca10g00358 742 Pfam SWIM zinc finger 515 540 IPR007527 GO:0008270
Cca10g00358 742 ProSiteProfiles Zinc finger SWIM-type profile. 506 542 IPR007527 GO:0008270
Cca10g00358 742 PANTHER PROTEIN FAR1-RELATED SEQUENCE 4 2 702 - -
Cca10g00358 742 CDD NTF2_like 351 441 - -
Cca10g00358 742 MobiDBLite consensus disorder prediction 645 686 - -
Cca10g00358 742 Pfam FAR1 DNA-binding domain 28 114 IPR004330 -
Cca10g00358 742 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 702 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00358 Cca-Chr10 3789350 3793928 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca10g00358 MULE 3.8e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00358 - - gmx:100805273 1389.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00358 10 3789350 3793928 Cca10g00358 10 3789350 3793928 ECH