Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00357 ATGGAGTCAGATCTCGAGCAACAAGCTCCGGTGAATTCTTCGGGTTTGACACGGTACCGATCGGCGCCGAGCTCTTATTTCTCCAACATCATCGACCGCGAGTTCTACGAGCACATTTTCAACCGTCCCTCGAGTCCAGAAACTGAGCGAGTCTTCTCGGGCTTCATCAACAGCTTAAGCGCCGATGCTGCACCGgaagaacaagaagaagaaaaagaaaaagaagaagaagaTTCGCTTCATCGCAAGCTCTCAACTGATTCCGCTATTAAGGAAGAAGAGGTTAGCAACCCGCAGGAACACGTGGCGCTTCACGGGACCAATAGTAACATGAGTGCTTATAACTCAGCTTCTCATCATTTCTTCCAAACCTCTTCCAAACCACCTTTGCCCAACCACAACAACTTTCCCTCGGCTATGGAAGGAACGTATTCAATGGGACTCAGAAATAATTCTAACCTTATCCGCCACAGTAGTTCCCCTGCTGGACTATTTTCCCAAATTAACATTGAAAATGTGTATGCTGGAGTGAGAGGCGTGGGGACCTTGGGGGCGGTTAATAACAGTGTTGAAGAAGCGAAATTTTCTGCATCGAGGAGGTTGAAGAATCAACAGAATTTTGGGTCGGGGCGAATGTCGTCCATAGCTGAAATTGGGGACAGGAATAGAGAAGGTAGTCCTGATAATGAAGGTTTTGTTGATGGTGGTAACGATTTTATGGCTGGTTTTCAAGGTGGTGGTCATTGGGATGATTCTGCAATGATGTCTGACAACGTGGGTGGTGTGAAAAGATTTAGAGAAAACGATGGAAAACCATTTTCTGGAGCTGAGACTCAGAATGAAACGGGACAGAATCCTGGTCCTTTGGCCCATCAAATGAGTTTGCCGAATACTTCAGCTGAAATGGCAGCCATTGAGAAGTTTCTGCACTTTTCAGATTCAGTTCCGTGCAAAATTCGTGCCAAGCGTGGCTGTGCCACTCACCCTAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGCGAGCGTATGAGGAAACTTCAAGATCTTGTCCCAAACATGGACAAGCAAACAAACACGGCAGATATGTTGGACTTGGCTGTGGATTACATCAAAGACCTTCAAAAGCAAGTTCAGACGCTTTCAGACGTTCAAGCTAAGTGTACGTGTTCACATGAGAAGCAACAATAA 1194 0.4481 MESDLEQQAPVNSSGLTRYRSAPSSYFSNIIDREFYEHIFNRPSSPETERVFSGFINSLSADAAPEEQEEEKEKEEEDSLHRKLSTDSAIKEEEVSNPQEHVALHGTNSNMSAYNSASHHFFQTSSKPPLPNHNNFPSAMEGTYSMGLRNNSNLIRHSSSPAGLFSQINIENVYAGVRGVGTLGAVNNSVEEAKFSASRRLKNQQNFGSGRMSSIAEIGDRNREGSPDNEGFVDGGNDFMAGFQGGGHWDDSAMMSDNVGGVKRFRENDGKPFSGAETQNETGQNPGPLAHQMSLPNTSAEMAAIEKFLHFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVQTLSDVQAKCTCSHEKQQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00357 397 MobiDBLite consensus disorder prediction 264 287 - -
Cca10g00357 397 MobiDBLite consensus disorder prediction 1 20 - -
Cca10g00357 397 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 13 394 - -
Cca10g00357 397 MobiDBLite consensus disorder prediction 75 96 - -
Cca10g00357 397 MobiDBLite consensus disorder prediction 273 287 - -
Cca10g00357 397 SMART finulus 331 381 IPR011598 GO:0046983
Cca10g00357 397 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 394 - -
Cca10g00357 397 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 328 388 IPR036638 GO:0046983
Cca10g00357 397 Pfam Helix-loop-helix DNA-binding domain 330 376 IPR011598 GO:0046983
Cca10g00357 397 MobiDBLite consensus disorder prediction 44 96 - -
Cca10g00357 397 Gene3D - 326 396 IPR036638 GO:0046983
Cca10g00357 397 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 325 375 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00357 Cca-Chr10 3776902 3780272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00357 4 392 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 39.461 1.11e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca10g00357 HLH 5.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00357 - - ccaj:109806502 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00357 10 3776902 3780272 Cca10g00357 10 3776902 3780272 ECH
Cca10g00357 10 3776902 3780272 Cca04g00556 04 5506554 5510904 ECH
Cca02g00779 02 20638498 20642461 Cca10g00357 10 3776902 3780272 ECH
Cca03g02001 03 40130575 40133282 Cca10g00357 10 3776902 3780272 ECH