Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00351 ATGGGAAGAGAAAAAGGAAAAGCTAAAAATGTGGAAGATGGACAAGGGTGCCGTCAAGTTCTTGGTGACATTGGTAATTTGGAGGTGCCTAGAATCACTGAAGGGAAACTCATTTCAAAGCCATTTACAAGAAACTTACATACAAAACTGTCGGAAAATGAGCTATCTCAAGAAGATCCGGTACTGGTGTTAGACGTTCATGTTAATGAGCAGGGAGCTGCACAAGGGAACAAAAGCGTTATTGTACCTACTCTAGACAAAGAAGCAATTGTTCACCAGGAACATGGTGCCGAAGATTTCTTTCGCAAACCAAATCTTGAGCCTGTAGCTATGGCTAGTTCTGAAGCTGGAGAAAGGGAAGCTTCTGGAGTTTTGATTGAAGCTGAGTATGAACCTTTTTACATTGATGTAAATGATCCTCATGAAGTGGCAGTAGCTGAATACTTTGACGACATATACAGATTCCTTAAGCTTGCTGAACTGGAGACTGGGTTTCGAGCTTCAGATTACATGAATTCACAACATGATATTAATGAGATTATGAGATCAATTGTGGTGGACTTTTTGGTTGATGCCCACATGAGATTTCATTTAGTGCCTGAAACCCTCTTTCTCACGGTAAACATATTTGATCGATACCTATCATCAACAATCGTGCCTAAGGAAGAAATACTGTTGTTAAGCATAAGCTCAATGCTCATAGCTTGCAAATACGAAGAGATGTGGACCACTCCTAAGGTTAGCGACTTCATTAGCATAACAGACAATGCTTACTCAAGAAACCAAATACTTTCCATGGAGAAAGACATTCTGATGAAGTTAGAATGGAAATTAAGTGTCCCCACCTCGTATGTATTCATAGTCACATACATCAGAGCTTTTAATCTACCAGATAAACAGATGGAGAACATGGTATTTTTCTTAGCGGAACTTGGACTTGCGAACTACCGAACCGCAATTTCGCTCCTACCTTCAATGCTTGCCGCAGCAGCAGTTTATGCTGCTCGGTTTACACTTAATAGAAATCCCATATGGAACGAAATCCTGAAGAATAGGGCTGGCTACACCACACAAAAAATAAGAGACTGTGCGAAGCTTCTAGTTAGGTTACTCTCAAATGCTCCAAACAGTAACACAAACACACTGTATCAGAAATTTTGCAGCATTGACAGAGGAGGCGTAGCGTATTTAACTCCGCCGAACGATTTTGAAACACATTTGTAA 1224 0.4044 MGREKGKAKNVEDGQGCRQVLGDIGNLEVPRITEGKLISKPFTRNLHTKLSENELSQEDPVLVLDVHVNEQGAAQGNKSVIVPTLDKEAIVHQEHGAEDFFRKPNLEPVAMASSEAGEREASGVLIEAEYEPFYIDVNDPHEVAVAEYFDDIYRFLKLAELETGFRASDYMNSQHDINEIMRSIVVDFLVDAHMRFHLVPETLFLTVNIFDRYLSSTIVPKEEILLLSISSMLIACKYEEMWTTPKVSDFISITDNAYSRNQILSMEKDILMKLEWKLSVPTSYVFIVTYIRAFNLPDKQMENMVFFLAELGLANYRTAISLLPSMLAAAAVYAARFTLNRNPIWNEILKNRAGYTTQKIRDCAKLLVRLLSNAPNSNTNTLYQKFCSIDRGGVAYLTPPNDFETHL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00351 407 CDD CYCLIN 181 271 IPR013763 -
Cca10g00351 407 Pfam Cyclin, C-terminal domain 281 399 IPR004367 -
Cca10g00351 407 SMART cyclin_7 187 272 IPR013763 -
Cca10g00351 407 SMART cyclin_7 285 369 IPR013763 -
Cca10g00351 407 PIRSF Cyclin_A_B_D_E 1 407 IPR039361 -
Cca10g00351 407 Pfam Cyclin, N-terminal domain 151 279 IPR006671 -
Cca10g00351 407 PANTHER CYCLINS 14 400 IPR039361 -
Cca10g00351 407 ProSitePatterns Cyclins signature. 182 213 IPR006671 -
Cca10g00351 407 SMART Cyclin_C_2 281 400 IPR004367 -
Cca10g00351 407 Gene3D - 167 272 - -
Cca10g00351 407 PANTHER CYCLIN-B1-4 14 400 - -
Cca10g00351 407 Gene3D - 273 406 - -
Cca10g00351 407 SUPERFAMILY Cyclin-like 280 401 IPR036915 -
Cca10g00351 407 SUPERFAMILY Cyclin-like 143 278 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00351 Cca-Chr10 3734608 3738295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00351 7 403 Core Cell Cycle Gene Families AT2G26760 40.100 3.59e-89 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00351 K21777 - zju:107404651 336.265