Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00338 ATGGATTCCGAGGATGATATGCACGACGCCAACGACGTCGAGTCCCTCGACGACGATTTCTACAGTGGCGAGACCGAGGATGCTCCCATGGATTACTACAGTgactacgacgacgaccccgatgatttcctcgacgacgacCCCGATTCCGACCGGATTGAGTCTCGCCGCCCCGAGCAAAATTTTACCATATTGAAGGAATCGGATATCCGGCGAAGGCAGGAAGATGACATCGATAGAGTAGCGACAGTTCTATCCATACCGCGGGAATCTGCGAGCATCCTACTTCGTCACTACAATTGGAGTGTGAGTAAGGTGCATGATGCTTGGTTCGTTGATGAGGAAAAAGTCCGAAAAACAGTTGGTTTGTTGGAGAAGCCAGTTCTCCAGAATTATAATTCTAGAGAGCTTACTTGTGGCATCTGTTTTGAAAAATATCTTCCTTCACGGGTTAAATCTGCTTCTTGTGGTCATCCTTACTGCTATTCATGCTGGGCAGGATATATTAGCACTTCAATTAACGATGGACCGGGATGTTTGGGGCTTAGATGTCCTGATCCCATTTGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTTTTAGCATCTGACGAAGATAAAGAGAAGTATGACCGTTACCTTATTAGGTCATACATTGAAGACAATAAAAAGACCAAGTGGTGTCCTGCTCCCGGATGTGAGTATGCAGTTACTTTTGATGCTGGCAGTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACCGAGGAAGCTCACCGTCCAGTGGACTGTGGCACTGTGGCAAAGTGGATATTGAAAAACAGCGCAGAATCTGAAAACATGAACTGGATACTTGCTAACTCTAAGCCATGTCCCAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCATATGACATGTACTCCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGTTTTTATGCTTGCAATCGATATGAGACGGCTAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCTAAGAATTCGTTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACATCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACACACAATGCCAGCCTGAATCCCAGCTTAAGTTCATAACGGAGGCCTGGTTACAGATAGTTGAATGCAGGAGGGTGCTGAAATGGACATATGCATATGGATTCTACTTACCCGAGCATGAACATGCCAAAAAACAGTTCTTTGAGTACTTGCAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTACAGCTATTCCTCAATGCTGATGGCCCATCTAGAGAATTCAATGACTTTCGCACCAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTCGAGAATTTAGTGAGGGCATTAGAGAATGGTTTGTCTGATGTGGACAGTAATGGAGCTGCTTCCAGCAAAGCAACGAGCTCAAAAAATGGTGCAGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAAGCTACTATTAGGGCTAGCATACCCAACAGAATGACTGATGATAATCATTGGTCTTGTGAACATTGTACCTATGCGAATGTTAGATCTGCCACCACATGCCAGATGTGCAATCAACCCCGTCGATGA 1773 0.4371 MDSEDDMHDANDVESLDDDFYSGETEDAPMDYYSDYDDDPDDFLDDDPDSDRIESRRPEQNFTILKESDIRRRQEDDIDRVATVLSIPRESASILLRHYNWSVSKVHDAWFVDEEKVRKTVGLLEKPVLQNYNSRELTCGICFEKYLPSRVKSASCGHPYCYSCWAGYISTSINDGPGCLGLRCPDPICGAAVGQDMINLLASDEDKEKYDRYLIRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNADGPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKATSSKNGAGSSKGRGGRGKATIRASIPNRMTDDNHWSCEHCTYANVRSATTCQMCNQPRR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00338 590 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Cca10g00338 590 Gene3D - 266 521 - -
Cca10g00338 590 SUPERFAMILY Ran binding protein zinc finger-like 562 589 IPR036443 -
Cca10g00338 590 MobiDBLite consensus disorder prediction 1 48 - -
Cca10g00338 590 SMART ibrneu5 208 270 IPR002867 -
Cca10g00338 590 SMART ibrneu5 274 344 IPR002867 -
Cca10g00338 590 SMART zf_4 564 588 IPR001876 -
Cca10g00338 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 220 IPR013083 -
Cca10g00338 590 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 -
Cca10g00338 590 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 -
Cca10g00338 590 MobiDBLite consensus disorder prediction 522 556 - -
Cca10g00338 590 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 538 - -
Cca10g00338 590 CDD RING-HC_RBR_TRIAD1_like 139 189 - -
Cca10g00338 590 SUPERFAMILY RING/U-box 208 277 - -
Cca10g00338 590 Pfam Ariadne domain 357 518 IPR045840 -
Cca10g00338 590 SUPERFAMILY RING/U-box 289 337 - -
Cca10g00338 590 MobiDBLite consensus disorder prediction 1 58 - -
Cca10g00338 590 ProSiteProfiles Zinc finger RING-type profile. 139 185 IPR001841 -
Cca10g00338 590 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 538 IPR031127 GO:0004842|GO:0016567
Cca10g00338 590 SUPERFAMILY RING/U-box 134 220 - -
Cca10g00338 590 MobiDBLite consensus disorder prediction 522 540 - -
Cca10g00338 590 ProSitePatterns Zinc finger RanBP2-type signature. 566 585 IPR001876 -
Cca10g00338 590 ProSiteProfiles Zinc finger RanBP2 type profile. 562 590 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00338 Cca-Chr10 3560337 3567841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00338 17 589 ARIADNE family AT1G65430 70.740 0.0 844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00338 K11968 - gmx:100810427 1105.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00338 10 3560337 3567841 Cca04g00536 04 5237350 5245462 PCT