Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00330 ATGGATCACCAATCTGGCCAGGGATTTGATTCAGATGATAGTGACCTTGATATGCAAGCAGAAATTAATGAGAAACATAAGAATGTGGATGAATTTTCAAAACACCTAGAATTTTGTGGAAGTGAAGATGAAAAGTTTGTCGAACAACCTGTAGCAGACATTTCAACAGATATAGAAGCTGTAgaaccattcataggcatggagttcaattcaagagaggaagccagagaattctatattgcatatggtaggcggataggatttaccgtacgaatacaccataaccgtcgttcacgagtaaataaccaagtcattggtcaagattttgtctgctcgaaagaaggatttcgtgcaaaaaagtatgtacacagaaaagatagagtgctacctcctccaccagccacccgtgaaggttgtcaggccatgataaggttggcattacgggatggagggaagtgggttgtcaccaaatttgtgaaggagcatactcataaactaatgagtcccagcaaagttccatggcgaggatcTGGGAAGCACTTGGTTAGTGAGGTATGTCTCTCCAGACAGGCgattatgattagatggtacttatga 597 0.1474 MDHQSGQGFDSDDSDLDMQAEINEKHKNVDEFSKHLEFCGSEDEKFVEQPVADISTDIEAVEPFIGMEFNSREEAREFYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHRKDRVLPPPPATREGCQAMIRLALRDGGKWVVTKFVKEHTHKLMSPSKVPWRGSGKHLVSEVCLSRQAIMIRWYL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00330 198 MobiDBLite consensus disorder prediction 1 24 - -
Cca10g00330 198 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 1 185 - -
Cca10g00330 198 PANTHER FAR-RED IMPAIRED RESPONSE-LIKE PROTEIN 1 185 - -
Cca10g00330 198 Pfam FAR1 DNA-binding domain 77 167 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00330 Cca-Chr10 3488627 3493313 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca10g00330 FAR1 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00330 - - gmx:100813124 348.591