Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00327 ATGGCCATGTTGAATATGAAGCAATGGCTAGTTGGATTTGGGAGTCTAGTTAAGGTTGTGGTTTTTTCATGCTTGTGGTTGCAAGTTTCAAGTCTTGGCTCCATGTCTTCCATTGCCACCTCTTATGGAGACAAAGGGTCCGTTTTTTGTGGCTTGAAATCAGATGGATCTCACACTGTGACCTGCTATGGAATGAACTCAGCCATAATTTATGGAACACCAACGCATTTCCCGTTCCTTGGTCTAACCGGTGGCGATGGCTTTGTGTGTGGCCTTCTAATGAGTTCTAGTCAACCATATTGCTGGGGTAGCAGTGGCCATGTTGAAATGGGTGTGCCACAGCCTATGGTTAAGGGAGCACAGTACCTAGAGATCAGTGCTGGGGACTATCATGTTTGTGGATTGAGGAAACCATTGACAGGGAGACACAGGAACACTTCCTTGGTTGATTGTTGGGGCTACAACATGACCAATAACTATGTGTTTGATGGACAGGTTCAATCAATCTCAGCAGGTTCTCAATTCAATTGTGGCTTGTTTTCCCAGAATAGGACTGTGTTCTGCTGGGGAGATGAGAGTAGTAGCCCAGTTATTGATATGATCCCTCATGGCACGAGGTTCCAGAAGATCTCTGCTGGAGGGTACCATGTGTGTGGAATCTTGGAAGGGGTGAATTCTAGAGCAGTTTGTTGGGGGAGGAGCTTGTTGGATATGGGGGAAGAGGTTTCAATTTCATTGAGACAAGGACAAGGTAATAATGTTGATATGGCTCCAACGGATCCAATGCTTTCTGTGGTGGGAGGGAAGTTCCATGCATGTGGCATTAAGAGCTATGATCATGGAGTGGTTTGCTGGGGCTATAGTTTCAAAGCAGGTACCCCAGTTCCTAGAGGGATTAAGGTCTTCGTGGTTTCTGCTGGGAATTACTTTACTTGTGGAATACTTGTTGAGAAATCTCTTGTGCCTGTTTGTTGGGGTGTTGGCTTCCCTTCATCTCTTCCTTTGCCTGCCTCACCAAGAATGTGTAGGTCTACACCATGTCCTCCAAGTTACTATGAAACCCCACAAAATGGTCTTTGCAAGTCTCCAGGTTCCCATGTTTGCATGCCATGCAGTCCTTCTTGTCCTCCTGAGATGTACCAAAGAAGTGGATGCAACTTGAAATCTGACATATTATGTGAATATAATTGTTCCATCTGTTCCTCACCTGAATGCCTCTCCAATTGCTCCTCTTCCAATGATGCTGCCAGTGGCAAGAAGAGTGAAAGATTTTGGTCCATGCAGTTGCCAGTGGTTATTGCTGAGATAGCTTTTGCTGTTTTCTTAGTTAGCATTGTGTCCATAACCGCTGTGTTGTATGTTCGCTACAAGCTGAGAGATTGTCAATGTCCTTCAGTGAGAGGCTCAAATGTGAAGAAACTAAAAGGGGGTTGCTCACACCAAAAGGAGAAATGCAAGATCAGACCAGACTTGGAGGAGTTCAAGATCAGAAGGGCACAGATGTTCCCCTATGAGGAACTTGAGAGAGCAACTAGTGGATTCAAAGAAGAATCCATAGTGGGGAAGGGAAGTTTCTCTTGTGTGTTCAAGGGTGTTCTCAAAGATGGCACTGTTGTTGCTGTCAAAAGGGCCATAATGTCTCCCAACGTGCAGAAAAACTCCAAGGAGTTTCACACTGAGCTTGACTTGCTCTCTAGATTGAACCATGCACACTTGCTCAATCTACTAGGATACTGTGAAGAAGGTGGAGAGAGGCTCCTTGTTTATGAATACATGGCTCATGGCTCTTTGCATCAACACCTACATGGCAACAAAGTGATGAAAGAGCAACTTGATTGGGTGAGAAGAGTAACAATTGCAGTGCAAGCAGCACGTGGAATAGAATATTTGCATGGCTATGCATGTCCACCAGTGATCCATAGAGACATCAAGTCTTCAAACATCCTCATTGATGAAGAACACAATGCTAGAGTGGCTGATTTTGGTTTGTCACTGCTTGGTCCTGCAGATAGTAGCTCCCCTCTGGCTGAGTTGCCAGCTGGCACTCTTGGTTATCTTGACCCTGAATACTATAGGCTTCACTATCTCACAACAAAGTCTGATGTGTACAGCTTTGGTGTCCTACTTTTGGAGATTCTAAGTGGTAGAAAAGCCATAGACATGCAATATGAAGAAGGGAACATTGTTCAATGGGCAGTGCCCCTGATCAAGTCAGGAGACATAGATGCAATTTTGGACCCAGTTTTGAAACCCCCTCCTGACCTTGATGCATTGAGAAGGATAGCAAATGTGGCATGCAAAAGTGTGAGAATGAGAGGGAAAGATAGGCCCTCAATGGACAAAGTGACAACAGTTTTGGAGAGAGCTTTGGCACAGTTGATGGGAAGTCCTTGCATTGAGCAACCAATTTTGCCAACTGAAGTGGTTTTGGGAAGTAACAGATTGCACAAGAAGTCATCTCAAAGATCTTCAAACAGGTCAGAAAGTACTGATGTGGAGGATCAAAGGTTTGAGTTTAGAGCACCCTCATGGATCACTTTCCCAAGTGTGACTTCCTCTCAGAGAAGGTCAGGCTCAGAGGCTGATGTTGAGGGGAAAAACATTGCAGAAGGGAGGCATAACGTTGGAGGTGGTGGTGATGTTTTGAGAAGCCTTGAGGAAGAGATTGGTCTTGCTTCTCCTCAAGAGAGACTCTTCTTGCAACACAACTTCTAA 2715 0.4505 MAMLNMKQWLVGFGSLVKVVVFSCLWLQVSSLGSMSSIATSYGDKGSVFCGLKSDGSHTVTCYGMNSAIIYGTPTHFPFLGLTGGDGFVCGLLMSSSQPYCWGSSGHVEMGVPQPMVKGAQYLEISAGDYHVCGLRKPLTGRHRNTSLVDCWGYNMTNNYVFDGQVQSISAGSQFNCGLFSQNRTVFCWGDESSSPVIDMIPHGTRFQKISAGGYHVCGILEGVNSRAVCWGRSLLDMGEEVSISLRQGQGNNVDMAPTDPMLSVVGGKFHACGIKSYDHGVVCWGYSFKAGTPVPRGIKVFVVSAGNYFTCGILVEKSLVPVCWGVGFPSSLPLPASPRMCRSTPCPPSYYETPQNGLCKSPGSHVCMPCSPSCPPEMYQRSGCNLKSDILCEYNCSICSSPECLSNCSSSNDAASGKKSERFWSMQLPVVIAEIAFAVFLVSIVSITAVLYVRYKLRDCQCPSVRGSNVKKLKGGCSHQKEKCKIRPDLEEFKIRRAQMFPYEELERATSGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIMSPNVQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEYMAHGSLHQHLHGNKVMKEQLDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVQWAVPLIKSGDIDAILDPVLKPPPDLDALRRIANVACKSVRMRGKDRPSMDKVTTVLERALAQLMGSPCIEQPILPTEVVLGSNRLHKKSSQRSSNRSESTDVEDQRFEFRAPSWITFPSVTSSQRRSGSEADVEGKNIAEGRHNVGGGGDVLRSLEEEIGLASPQERLFLQHNF 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00327 904 SMART serkin_6 514 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00327 904 Pfam Protein kinase domain 514 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00327 904 PANTHER RECEPTOR-LIKE KINASE 6 904 - -
Cca10g00327 904 ProSiteProfiles Protein kinase domain profile. 514 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00327 904 SUPERFAMILY RCC1/BLIP-II 31 287 IPR009091 -
Cca10g00327 904 Gene3D Transferase(Phosphotransferase) domain 1 592 796 - -
Cca10g00327 904 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 6 904 - -
Cca10g00327 904 Gene3D Phosphorylase Kinase; domain 1 486 591 - -
Cca10g00327 904 Gene3D - 80 346 IPR009091 -
Cca10g00327 904 MobiDBLite consensus disorder prediction 814 834 - -
Cca10g00327 904 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Cca10g00327 904 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 346 393 IPR001368 GO:0005515
Cca10g00327 904 SUPERFAMILY Protein kinase-like (PK-like) 496 786 IPR011009 -
Cca10g00327 904 ProSitePatterns Protein kinases ATP-binding region signature. 520 542 IPR017441 GO:0005524
Cca10g00327 904 MobiDBLite consensus disorder prediction 850 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00327 Cca-Chr10 3468541 3472085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00327 1 904 Receptor kinase-like Gene Family AT3G59420 67.432 0.0 1226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Cca10g00327 Pkinase 7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00327 - - gmx:100807392 1626.3