Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00326 ATGAAACGAGCGTTGATAGGGTTGTCCTCAGGTGAACCCTTCTCTTGTGTTCTGAATGAATCTGCACGGACACACCAAAATTTAACTTATTTTTCCCAATCACGCTCGCTTCCTACCACAATCCTATTTCCCATGGAGTTTGGGATTGATAGCTCCATTAGTGGTGAGACAGTAACAGTAGGAAATGCTTCTATAGGGCAGATTAATAGCAGCACAGCTGATGAAAACAAAGTGGGATGCAGTTCTTTTAATCCTGCCTATAAACAAGATCATGATGATAATATAACTCAAGATTCTTCTGGAGGGGACACAATCCCATCAGGAATTCCTGCAGTATCAATTGTGTCAGCTGATGAGCCCTATGTGGGTCAGGAGTTTGAATCTGAAGCTGCAGCACATGCATTCTATAATGCATATGCTACACGTGTTGGATTCATCATACGTGTAAGTAAGCTCTCTCGATCAAGGCGTGATGGAACTGCTATTGGACGGGCTCTTGTTTGCAACAGAGAAGGTTATAGAATGCCTGACAAACGTGAAAAGATTGTAAGGCAAAGGGCAGAGACAAGGGTTGGTTGCAGGGCAATGATCTTGGTGAGGAAAGTAAGTTCTGGTAAATGGGTTGTTACAAAGTTTATAAAGGAGCACACACATCCTTTGGCACCTGGAAAAGGTAGAAGGGATTGCATTTATGAGCAATATCCGAATGAGCATGATAAAATTCGAGAACTATCTCAGCAGTTGGCTTTAGAGAAAAAGCGCTCTGCAACCTATAAAAGGCATCTTGAATTGATATTTGAGCACATTGAGGAACATAATGACAGCCTTTCAAAGAAAATACAGCACATAGTAGACAGTGTGAATGAGATGGAAACCAAGGAACAACAGAGTCACAGATAG 900 0.4178 MKRALIGLSSGEPFSCVLNESARTHQNLTYFSQSRSLPTTILFPMEFGIDSSISGETVTVGNASIGQINSSTADENKVGCSSFNPAYKQDHDDNITQDSSGGDTIPSGIPAVSIVSADEPYVGQEFESEAAAHAFYNAYATRVGFIIRVSKLSRSRRDGTAIGRALVCNREGYRMPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFIKEHTHPLAPGKGRRDCIYEQYPNEHDKIRELSQQLALEKKRSATYKRHLELIFEHIEEHNDSLSKKIQHIVDSVNEMETKEQQSHR 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00326 299 Pfam FAR1 DNA-binding domain 135 221 IPR004330 -
Cca10g00326 299 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 45 297 - -
Cca10g00326 299 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 45 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00326 Cca-Chr10 3459337 3463085 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca10g00326 FAR1 4.9e-30 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00326 - - gmx:100806900 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00326 10 3459337 3463085 Cca04g00524 04 5112952 5116880 PCT