Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00321 ATGTGGTTCTCATTTCTTAGTCCTTTTCCAATGCGACACTCCAATATTAATGCACCTTGTGATGATCACTCACCCCAAGTAGCACACAATGTTCCTCAACTTGATCATGGAGGGTGGTCTAGGCGTGGTCGAGAATTTTGTGAGGCAAGAAGAGCATTTCTTAACAGTTACCATTTGAGTTTGGATCAAAGGAACAACAACAATGGGAGCTTCAAGGAGAAGTTGAAGAAATCAGTGAGGGAGGTAAACGAGGCTGCAATGGGAGTTGTTTTGGGCATGCGTCGTGGGGTGTCCAAGAGAAGGGTTGGCATTAGGGTTTTTAGGGTCAAAATGAGTGCACAATCGTTGGCTCTTGTTACCATGAGATGTTTTATACCATGGTTGAAAAAAAGTGatattatataTTGTTCGCATATCGCTGACTCTGAGAAAAGGAAGGGAAGAGTAATTAACATGAAAATTCAGTGTGATGTGTGTGAGAGAGCTCCGGCAACAGTGATTTGTTGTGCGGATGAGGCAGCTTTGTGTGCCAAATGTGATGTTGAAGTGCATGCTGCTAACAAGCTTGCAAGTAAGCACCAGAGGCTTCTTCTTCAATGTCTATCAAACAAGCTTCCCAGATGTGACATTTGCCAAGACAAGGCAGCATTCATATTTTGTGTTGAAGACAGAGCACTGTTCTGTCAGGATTGTGATGAACCAATTCATGCAGCTGGCAGCCTGTCCGCGAACCACCAGCGCTTCCTTGCTACCGGTATCCGAGTAGCCGCTAGTTCTAATTGCACCAAAGATAATGAAACAAGTCACTTGGAGCCTCCTAATAGGAATGCACAACAAGTGTCCGGTTCCACCAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCACTTCCTCTTGGGCTGTTGATGACTTGTTGGAATTAACAGGCTTTGAATCACCTGAAAAAAAGGAATCTCTGCAATTTGGAGAGCTGGAATGGCTTACAGATGAGGGTATTTTTGGTGAACAGTTTGCTCAAGAAGCCTTGGCTGCAGCTGAAGTACCTCAGCTTCCAGTGACTCATAATGGTGGCAGTGTTGCCTCATACAGAACCTCCAAGTCCTACATGTCCCACAAAAAGCCTAGGATTGAAGCCCTAAatgatgatgatgatgatgatgaGTATTTTACTGTGCCTGATCTTGGCTAA 1185 0.4371 MWFSFLSPFPMRHSNINAPCDDHSPQVAHNVPQLDHGGWSRRGREFCEARRAFLNSYHLSLDQRNNNNGSFKEKLKKSVREVNEAAMGVVLGMRRGVSKRRVGIRVFRVKMSAQSLALVTMRCFIPWLKKSDIIYCSHIADSEKRKGRVINMKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALFCQDCDEPIHAAGSLSANHQRFLATGIRVAASSNCTKDNETSHLEPPNRNAQQVSGSTKVPSQQVPSFTSSWAVDDLLELTGFESPEKKESLQFGELEWLTDEGIFGEQFAQEALAAAEVPQLPVTHNGGSVASYRTSKSYMSHKKPRIEALNDDDDDDEYFTVPDLG 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00321 394 Pfam B-box zinc finger 203 246 IPR000315 GO:0008270
Cca10g00321 394 Pfam B-box zinc finger 154 195 IPR000315 GO:0008270
Cca10g00321 394 ProSiteProfiles Zinc finger B-box type profile. 203 250 IPR000315 GO:0008270
Cca10g00321 394 MobiDBLite consensus disorder prediction 263 290 - -
Cca10g00321 394 ProSiteProfiles Zinc finger B-box type profile. 151 198 IPR000315 GO:0008270
Cca10g00321 394 MobiDBLite consensus disorder prediction 379 394 - -
Cca10g00321 394 CDD Bbox1_BBX-like 156 198 - -
Cca10g00321 394 SMART bboxneu5 151 198 IPR000315 GO:0008270
Cca10g00321 394 SMART bboxneu5 203 250 IPR000315 GO:0008270
Cca10g00321 394 MobiDBLite consensus disorder prediction 370 394 - -
Cca10g00321 394 Gene3D Classic Zinc Finger 151 243 - -
Cca10g00321 394 PANTHER B-BOX ZINC FINGER PROTEIN 22 152 394 - -
Cca10g00321 394 PANTHER B-BOX ZINC FINGER PROTEIN 24 152 394 - -
Cca10g00321 394 CDD Bbox1_BBX-like 208 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00321 Cca-Chr10 3417716 3422211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00321 152 314 Orphan Transcription Factor Family AT1G06040 64.286 2.29e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Cca10g00321 zf-B_box 2.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00321 - - vun:114183169 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00321 10 3417716 3422211 Cca04g00521 04 5093463 5097773 PCT