Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00317 ATGGACAAGGACAAATCTCTAGGTCACGGTGGAGGTTTGCCACCTCCATCGGGGCGTTATTCGGGTTACTCGGCCCCGGGAAGCGTGTTCAATGTGAAATCTGAGCcgtcgccgccgtcgtcgtcgtcgacgacgacgtATCCGCCGTTGGGTCCGGGAGGCAGCTCGGAAACTAGTCATTTCGGGCATGGAATGTCGACGGATTCTAGTGGATTTAGTCACGATATTAGCAGAATGCCTGATAATCCGCCGCGAAATAGAGGCCATAGGCGTGCCCATTCGGAGATTCTCACCCTGCCTGATGATATTAGCTTTGACAGTGACCTTGGTGTGGTGGGAGGTGCTGATGGGCCTTCCTTCTCCGATGACGCCGAGGAGGACTTGCTGTCCATGTACCTTGACATGGATAAATTCAACTCGTCGTCGGCCACGTCCACATTTCAGATGGGTGAGCCTTCCGGTGCTGTGGGAGCGTCCGCTTCGACGCCGGCGTTGGAGGCACCTGCATCTTATGCGGAGAATGTTGTAATTGGTAATAATGAAAGGCCCACCAGAGTTAGACACCAGCATAGTCAATCCATGGATGGGTCAACCACCATCAAGCCTGAGATGCTGGTCTCGGGTTCAGAAGACATGTCTGCGACTGATTCGAAAAAAGCAATGTCAGCTGCAAAGCTTGCTGAGCTTGCCTTGATTGACCCCAAGCGAGCAAAAAGGATATGGGCAAATAGGCAGTCTGCTGCAAGGTCAAAAGAGAGGAAGATGCGATACATTGCTGAGCTTGAAAGGAAGGTGCAAACATTGCAAACGGAAGCAACATCCTTATCTGCACAACTAACTCTCTTGCAGCAGAGAGATACAAATGGTTTGAATTCTGAGAACAGTGAACTAAAGCTGCGGTTGCAAACCATGGAGCAACAAGTTCATTTGCAAGATGCATTAAACGACGCATTAAAAGAGGAAATTCAGCATTTGAAAATACTGACCGGGCAAGCTATGCCACCTAATGGAGGACCTATGATGAACTTTGCTTCTTTTGGAGGGGGGCAGCAATTCTATCCCGGGGCCAAGGACTGTTGA 1080 0.4833 MDKDKSLGHGGGLPPPSGRYSGYSAPGSVFNVKSEPSPPSSSSTTTYPPLGPGGSSETSHFGHGMSTDSSGFSHDISRMPDNPPRNRGHRRAHSEILTLPDDISFDSDLGVVGGADGPSFSDDAEEDLLSMYLDMDKFNSSSATSTFQMGEPSGAVGASASTPALEAPASYAENVVIGNNERPTRVRHQHSQSMDGSTTIKPEMLVSGSEDMSATDSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQQRDTNGLNSENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKILTGQAMPPNGGPMMNFASFGGGQQFYPGAKDC 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00317 359 Coils Coil 287 321 - -
Cca10g00317 359 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 233 297 IPR004827 GO:0003700|GO:0006355
Cca10g00317 359 Pfam bZIP transcription factor 235 283 IPR004827 GO:0003700|GO:0006355
Cca10g00317 359 SUPERFAMILY Leucine zipper domain 235 284 IPR046347 GO:0003700|GO:0006355
Cca10g00317 359 SMART brlzneu 231 296 IPR004827 GO:0003700|GO:0006355
Cca10g00317 359 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 351 - -
Cca10g00317 359 MobiDBLite consensus disorder prediction 1 91 - -
Cca10g00317 359 Coils Coil 251 285 - -
Cca10g00317 359 CDD bZIP_plant_RF2 236 285 IPR044759 GO:0003700|GO:0006355
Cca10g00317 359 Gene3D - 234 288 - -
Cca10g00317 359 MobiDBLite consensus disorder prediction 27 76 - -
Cca10g00317 359 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00317 Cca-Chr10 3382133 3385036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00317 19 355 bZIP Transcription Factor Family AT1G06070 71.176 3.89e-160 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca10g00317 bZIP_1 2.9e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00317 - - ccaj:109806600 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00317 10 3382133 3385036 Cca04g00518 04 5060626 5064474 PCT