Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00316 ATGCCGCTTACTAACAAATCCATGGAAGGCGAGGAGTGGGGAACTCCGACCAACAACCTCTGGGTCGGGAATTTGACGCCGGAGGTCACCGATTCCGATCTCATGGACCTCTTCGCTCCGTACGGTTCTCTCGACACTCTCATATCCTATTCTTCTCGCACTTTCGCTTTCGTCTTATTCAGGCGCATCGAAGACGCCAAGGCCGCGAAGAACAACTTGCAAGGCGCTGCGCTGCGCGGTGTTCAAATCAGAATCGAGTTTGCCAGACCGGCGAAGCCGTGTAAGCAATTGTGGGTGGGTGGTGTTGGTCACGCCGTTACGAAGGAGGATTTGGAAGCGGAGTTTCGCAAATTCGGTAAGATTGAGGATTTTGTGTTCTTCAGAGACCGCGGTACTGCGTGCGTTGAGTTTCTCAATTTGGATGATGCTACGCGGGCCGTGAAAGTCATGAACGGGAAGCGATTAGGTGGAGGCCAGATTTGTGTAGACTTCGTTCGATCACAATCTACGAAGAGAGATCATTTGGTTGATCATGGGCAGTTTCAGGGTAGACCACAGCATTTGCAACCTTCAATGGGGAGGAATAGTCAACCGAGTAAGATTTTGTGGATAGGTTTTCCTCCTTCTTTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCTAGAAATTATTCATTTGTTGAATTTAGAAGCATTGATGAAGCTCAGCGTGCCAAAGAGGGTCTTCAAGGGCGGCTTTTTAATGATCCTCGAATAACGATTATGTATTCAAGCAGTGAGCTGGCACCTGGCAAAGATCACCCTGGCTTTTATCCTGGAAATAAAGGGCCTATGACTGATGGATTAGTTAATGAGCATCCATATCGAGCACTACAAACGGATGTATTTGGGCATAATCGTCCTGTGGTTCCAAATAATTTTCCTGGACAATTCCCACCTGGTGGTAATACTGGACCTAATGTCCCAATGCGACCTTTTGGTCCTCAAGGTCTTGAACCTCTTATCTCTGGTCCTGATTTTAATGAGATGGGTACACTCCATAAATTTCAGGATGGTAGCTCTAAAAGTCAGATGGGTCCAAGCTGGAAAAGGCCATCTCCTCCTGCCCCAGGAATGCTTCCTTCTCCTATGCATGGTATTAGGCATCCTACAAGATCCAACTCTGGTGCATGGGATGTACTTGACATAAACCAATTTCAGAGAGATTCTAAACGTTCACGGATAGATGATGCTCCATTTCCTTTAAGGAATATAGATGATCGTGGATTGGGACTAGAACAACCATTTGCAATTGATCCAGTTATTGATGGTGCTGGTTCTGGTCCAAGGAGTCACCTTGGTCCAGCCGGTTCTGTCCTACCTGATATTGATCATATATGGCGTGGAATTATTGCAAAAGGGGGAACTCTTGTTTGTCGTGCTAGATGTGTGCCTATTGGAAAAGGGATAGGAACTGCAATTCCTGATGTTGTAGACTGTGCTGCTAGGACTGGGCTAGATATGCTAACGAAACATTATGCTGATGCAATTGGCTTTGACATTGTTTTCTTTCTCCCTGATAGTGAAGAGGATTTTGCTTCATACACTGAATTCCTTCGCTACCTCAAAGCAAAAAACCGTGCTGGTGTTGCCAAGTTTGCTGATAACACCACTTTATTTTTGGTACCTCCTTCTGATTTCTTGACCAGGGTTTTGAAAGTCACAGGACCTGAACGTCTATATGGTGTGGTTCTTAAATTTCCATTAGTTGCAAGTAATGCATCTATGCAACAAGCAATGCATTTGCCGTCACCCTCTACTCAGTATATGCAACAGGTCCCCCCTTCACAAGCTGAGTATGGTTCAATCTCTGCAAAGGAGGAACAGAGTTTACCAATGGATTATAACAGATTGTTTCATGAGGATTCTAAGCATCCGCCAAAACCACTTCATGCAGCTACAAGTGTCCCCCCCTCAGCTCATTCTGTTCCTCCTGATTATGCTCCAACTTATACTGCTTCGGTATCCCAAGCTGGAGTTACATTGACACCCGAACTTATTGCATCTTTAACTTCTTTACTCCCTGGAACTACGCAATCATCAACCACTGGCCCCTCTACTGTGAAGCCTCCTTTTCCTCCTGTTGCACCTAATGATGGAAATCAGTCTCATTTGTGGAAACAAGATCAGCAAGTTGCAGATCCACCTAGTCATCCTCCTCAACAGTTTGGGAGTATTGATAATGCTCAATATCAACCTTATCCGCCTACATCTTCAACTGATCACCATGCTCAAGCGGTCTATGGCAGTTCTCATTTCCAAGATTCTGCTTCCAGGCTTCAGCAAATAGGTGCTGTTTCTTCTACACCCGTGACTAATTTCATCATACCTCAAAATGGACAGGTAGCTGTGTCCCCTCAAGTCAGTCAACAGTATCAGGTGGAAGTTTCCCACAACACTGAGAAAGGCTATGGAGTGGTTCAGGGAACTGATGCCTCTGTTTTATACAGTTCTAATGCGTTCCAACAACCCAATAATTTTATTGCCTCATCCAACCAAGTTTCCAATGCAGCTTCACAGCAACAAACTGTGATGCCCTATACAGTGGACAAAGTTAATTCGGAGCTCCCAAATCAGCAACTTCAACCTGCTTTATTTGGAGTGGGCTCAGGAATGTCAGAATTGGAGGCTGATAAGAACCAGAGGTACCAGTCAACACTACAGTTTGCTGCCAACCTTCTCCTCCAGATACAGCAACAGCAAACACAAGGAGGACATGGGCCAGGAAATCAACAATAA 2820 0.45 MPLTNKSMEGEEWGTPTNNLWVGNLTPEVTDSDLMDLFAPYGSLDTLISYSSRTFAFVLFRRIEDAKAAKNNLQGAALRGVQIRIEFARPAKPCKQLWVGGVGHAVTKEDLEAEFRKFGKIEDFVFFRDRGTACVEFLNLDDATRAVKVMNGKRLGGGQICVDFVRSQSTKRDHLVDHGQFQGRPQHLQPSMGRNSQPSKILWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPSRNYSFVEFRSIDEAQRAKEGLQGRLFNDPRITIMYSSSELAPGKDHPGFYPGNKGPMTDGLVNEHPYRALQTDVFGHNRPVVPNNFPGQFPPGGNTGPNVPMRPFGPQGLEPLISGPDFNEMGTLHKFQDGSSKSQMGPSWKRPSPPAPGMLPSPMHGIRHPTRSNSGAWDVLDINQFQRDSKRSRIDDAPFPLRNIDDRGLGLEQPFAIDPVIDGAGSGPRSHLGPAGSVLPDIDHIWRGIIAKGGTLVCRARCVPIGKGIGTAIPDVVDCAARTGLDMLTKHYADAIGFDIVFFLPDSEEDFASYTEFLRYLKAKNRAGVAKFADNTTLFLVPPSDFLTRVLKVTGPERLYGVVLKFPLVASNASMQQAMHLPSPSTQYMQQVPPSQAEYGSISAKEEQSLPMDYNRLFHEDSKHPPKPLHAATSVPPSAHSVPPDYAPTYTASVSQAGVTLTPELIASLTSLLPGTTQSSTTGPSTVKPPFPPVAPNDGNQSHLWKQDQQVADPPSHPPQQFGSIDNAQYQPYPPTSSTDHHAQAVYGSSHFQDSASRLQQIGAVSSTPVTNFIIPQNGQVAVSPQVSQQYQVEVSHNTEKGYGVVQGTDASVLYSSNAFQQPNNFIASSNQVSNAASQQQTVMPYTVDKVNSELPNQQLQPALFGVGSGMSELEADKNQRYQSTLQFAANLLLQIQQQQTQGGHGPGNQQ 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00316 939 MobiDBLite consensus disorder prediction 645 672 - -
Cca10g00316 939 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Cca10g00316 939 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Cca10g00316 939 Gene3D - 14 92 IPR012677 -
Cca10g00316 939 Gene3D - 93 179 IPR012677 -
Cca10g00316 939 Gene3D - 189 279 IPR012677 -
Cca10g00316 939 SUPERFAMILY RNA-binding domain, RBD 184 273 IPR035979 GO:0003676
Cca10g00316 939 CDD RRM3_Spen 97 166 - -
Cca10g00316 939 SUPERFAMILY RNA-binding domain, RBD 12 92 IPR035979 GO:0003676
Cca10g00316 939 MobiDBLite consensus disorder prediction 365 403 - -
Cca10g00316 939 MobiDBLite consensus disorder prediction 609 628 - -
Cca10g00316 939 PANTHER RNA RECOGNITION MOTIF-CONTAINING 7 939 - -
Cca10g00316 939 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 7 939 - -
Cca10g00316 939 Pfam SPOC domain 469 585 IPR012921 -
Cca10g00316 939 MobiDBLite consensus disorder prediction 702 770 - -
Cca10g00316 939 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Cca10g00316 939 CDD RRM3_Spen 20 89 - -
Cca10g00316 939 SMART rrm1_1 19 86 IPR000504 GO:0003723
Cca10g00316 939 SMART rrm1_1 96 163 IPR000504 GO:0003723
Cca10g00316 939 SMART rrm1_1 201 269 IPR000504 GO:0003723
Cca10g00316 939 MobiDBLite consensus disorder prediction 728 770 - -
Cca10g00316 939 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 83 IPR000504 GO:0003723
Cca10g00316 939 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 158 IPR000504 GO:0003723
Cca10g00316 939 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Cca10g00316 939 SUPERFAMILY RNA-binding domain, RBD 93 175 IPR035979 GO:0003676
Cca10g00316 939 CDD RRM3_Spen 202 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00316 Cca-Chr10 3369064 3376237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00316 97 268 Eukaryotic Initiation Factors Gene Family AT4G34110 28.962 3.02e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00316 - - gmx:100806555 1505.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00316 10 3369064 3376237 Cca04g00516 04 5036173 5047971 PCT