Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00313 ATGCCGAAGCAAATTCATGAGATTAAAGACTTTCTCCTCACTGCAAGGAGGAAGGATGCACGCTCTGTGAAAATTAAGCGTAGCAAAGATGTGGTGAAGTTCAAGGTCCGTTGCTCCAGGTACCTGTACACCCTCTGTGTGTTTGATTCTGAGAAGGCTGATAAGCTGAAGCAATCACTCCCTCCAGGTTTAAGTGTGCAGGACGTGTGA 210 0.4667 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSRYLYTLCVFDSEKADKLKQSLPPGLSVQDV 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00313 69 PANTHER 60S RIBOSOMAL PROTEIN L38 1 69 IPR002675 GO:0003735|GO:0005840|GO:0006412
Cca10g00313 69 Pfam Ribosomal L38e protein family 2 69 IPR002675 GO:0003735|GO:0005840|GO:0006412
Cca10g00313 69 PANTHER - 1 69 - -
Cca10g00313 69 Gene3D - 1 69 IPR038464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00313 Cca-Chr10 3329449 3332371 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00313 1 69 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 95.652 1.58e-44 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00313 K02923 - gmx:100500171 138.272