Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00312 ATGGACACAACTCCTTACACTCCAAACAACCTTTCACCACACTTAACCACCTTCCACTCCAATAATAACCAAAACCATGATACCATTGACGAGGTTGCAGCGTTAGATAACATGCACCGGAGCAACCACAGCCACACCTCCACCAGCCGTTCCTCCGACGCAAGCGAAACCACCGAAGACGCCAACAAATGGGCCTCGAGACTTCTCAGAGAGTGCGCAAAAGCCATATCAGAACGCGACTCCACCAAAACGCACCATCTCCTATGGATGCTCAACGAACTAGCTTCTCCTTATGGCGATTGCGACCAAAAACTGGCTTCATACTTCTTGCAAGCATTGTTCTGCAAAGCCACCGAGTCCGGCGAGAGATGCTACAAAACGCTCTCCTCCGTGGCGGAGAAGAACCACTCCTTCGACTCCATGCGGAAGCTGATTCTGAAATTCCAAGAGGTTAGCCCTTGGACCACGTTCGGCCACGTGGCGTCCAACGGCGCCATCCTCGAGGCCTTGGAAGGCGAGCCCAAGCTCCACATCATCGACATCAGCAACACTCTCTGCACGCAGTGGCCAACGTTACTAGAAGCCTTGGCCACACGAAACGATGAAACACCCCACTTGAAACTCACCGTTTTAGCGTTTGCTGGCTCGGTCATGAAGGAGGTAGGTCAACGCATGGAGAAGTTCGCGAGACTCATGGGAGTGCCATTCCAATTCAACGTGATCAACGGCTTAAGCGAAATCACGAAAGAAGGATTAGGGATTGCAGAAGACGAAGCCGTGGCTGTGAATTGCGTTGGAGCTTTACGAAGAGTGGAAGTGGAAGAAAGAGAAAATCTAATTCGTGCTTTCAAGTCTCTGAGTCCTAAGGTTGTCACCGTCGTGGAGGAAGAAGCCGATTTTCGGGGCTCCGGCGAGGATTTTCTGAAATGTTTCGAGGAGTGTCTTAGATTCTACACTCTCTACTTCGAGATGCTGGAGGAGAGTTTCGCGGCCACGAGCAACGAGAGGTTGATGCTGGAGAGGGAGTGTTCGAGGAGCATTGTTAGGGTTTTGGCTTGTTGTGGCGAGGAGGTTGAAGATGGTGgagagtgtgagagaagagagagagggaCACAATGGTGTGAGAGGCTGAGGAATGTTTTTTCGCCGTTTGGATTCAGCGATGACGTGGTGGATGATGTGAAAGCGTTGCTGAAGAGGTACCAGCCAGGGTGGTCGCTGGTGGTGTCTCAGGGAGAGGATCATGTTTCAGGAATTTACTTGACATGGAAGGAGGAACCAGTGATTTGGGCTTCAGCATGGAAACCCTAG 1311 0.5027 MDTTPYTPNNLSPHLTTFHSNNNQNHDTIDEVAALDNMHRSNHSHTSTSRSSDASETTEDANKWASRLLRECAKAISERDSTKTHHLLWMLNELASPYGDCDQKLASYFLQALFCKATESGERCYKTLSSVAEKNHSFDSMRKLILKFQEVSPWTTFGHVASNGAILEALEGEPKLHIIDISNTLCTQWPTLLEALATRNDETPHLKLTVLAFAGSVMKEVGQRMEKFARLMGVPFQFNVINGLSEITKEGLGIAEDEAVAVNCVGALRRVEVEERENLIRAFKSLSPKVVTVVEEEADFRGSGEDFLKCFEECLRFYTLYFEMLEESFAATSNERLMLERECSRSIVRVLACCGEEVEDGGECERRERGTQWCERLRNVFSPFGFSDDVVDDVKALLKRYQPGWSLVVSQGEDHVSGIYLTWKEEPVIWASAWKP 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00312 436 ProSiteProfiles GRAS family profile. 56 435 IPR005202 -
Cca10g00312 436 MobiDBLite consensus disorder prediction 1 25 - -
Cca10g00312 436 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 38 435 IPR005202 -
Cca10g00312 436 MobiDBLite consensus disorder prediction 40 59 - -
Cca10g00312 436 PANTHER PROTEIN SHORT-ROOT-LIKE 38 435 - -
Cca10g00312 436 Pfam GRAS domain family 67 435 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00312 Cca-Chr10 3318818 3320919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00312 39 436 GRAS Transcription Factor Family AT4G37650 52.370 1.89e-144 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca10g00312 GRAS 2.1e-95 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00312 - - gmx:100818806 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00312 10 3318818 3320919 Cca10g00312 10 3318818 3320919 ECH
Cca11g00404 11 5481904 5483931 Cca10g00312 10 3318818 3320919 PCT