Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00307 ATGGAATACCCTTTTTCCCCCAAGGGAGGAGGCATTGGGGATTGGCAATCTTCTAGAGCACAGTTGGAGGGGTCAACATCGTTAGATGGTGGAATGAGAAATTCAATATCAGAGGATATGCCCAATAGCTTTTCTGAGCTCATGAACTTTGATACTTATGCTGGCTTGTGCGATAGCCCATCCATAACTGATCAGATTTTGGCTAATGAGCTTCCATCATTTGCCTCGTTACCATATCCGTTGCCTGATGGATTCAATCTAGTCCAACAGAACAGTGGGCAATGCTATATGTCACGAGTTGGCAAAAATAACAATGATATGGAAAGCTCGCCCATGTATGGGGAGAAAGTTGGGTGTCAGCAAATGGATACCCTACTTGGTTTCTTCAGCAACTCAAATGATGGAAATAACTTGAATTCTAAGCTAAAAACTAATGGCTCTTCTCAACATAGTAATGCCTTTGATACCGGAAATTATATTATGTCCAGGCCACCTGGTTTGTCACTTGATGAGAGAATGCTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCTGGTGGGGGAATATTGGCTCAAGTTTGGGTACCCATAAAGCATGGTGATCAATTCATCTTAAGCACAAGTGAGCAACCTTATTTGCTAGATCAAATGCTCGCAGGGTATCGTGAAGTGTCCAGGACATTTACATTTTCTGCAGAAGGAAAATCTGGTTGTTTCCTAGGACTTCCTGGTCGTGTGTTTACCTCCAAAGTTCCTGAGTGGACTTCAGATGTTGGTTATTACAGTATGAGTGAGTACTTAAGGTTTGAACATGCAATTAATCACAAGGTTCGTGGATCAATTGCATTTCCCATATTTGATATGCACTCTGAACTGCCGTGCTGTGCTGTACTGGAACTTGTCACTACAAAGGAAAAGGCAGATTTTGACAAAGAATTGGAAATTGTTTGTCGTGCACTTCAGCTTGTAAATTTAAGGACTACTAAGCCTCTTCGACTTCTTCCCGAGTGTCTTTCAAACAACAAAAAAGCTACTTTGACTGAGATAGTTGATGTGTTACGTTCTGTCTGTCATGCTCATAGATTACCGCTGGCACTGACATGGATTCCCTGTTACACTGAGGGCTCCAGAGGTGAAGCTACAAGGATACAAATTAAAGAGGGTCATTCAACTTCCAGTGAAAAAGGCATACTGTGCATTGAAGAATCAGCTTGCTATATAACTGACAGAGCAATGACAGGATTTGTCCGTGCATGCATGGAACATCATCTTGAGGAAGGAAAAGGTGTAGCTGGGAAAGCTCTTCAATCAAACCATCCTTTCTTCTATCCGGATGTGAAGACGTATGATATTAGTGAATATCCACTTGTCCATCATGCACGCAAGTATAATTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACTTATACTAATGATGATGATTACATATTGGAATTCTTTCTGCCTGCCAATATGAGAGGGAGTTCAGAGCAACAACTTTTATTAGACAACCTCTCAGGTACCATGCAGAGGATTTGTAGGAGTTTGAGGACAGTTTCAGATGTCGAATTATCAGGAATAGGAAGCTCACAAGTGGGATTTGGAAAGAAAAATGTACCTAGTTTTTTTCCTTTGTCAAGTAGAAACTCTCAAATACCATTAATAAATGGTGACCGTGATTCTTCCCAGAAGATGTCATTGAAGGCAACTAACCTTGGAAACAATGAAATTGAGCCTTCTCCTAGCCAGGAAAGAAATGGATCAAAAAGGCAGGTCCAGAAAAATAGAAGTACGCTAGAGAAGAATGTTAGTCTGAGTGTTCTCCAGCAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAACACATTGGTGTTTGCCCAACAACTCTGAAAAGGATATGCAGGCAACATGGAATTTCAAGGTGGCCATCACGCAAGATTAATAAAGTGAATCGATCATTGAAGAAGATACAGACTGTGCTCAACTCTGTCCAGGGAGTGGAAGGAGGGTTGAAGTTTGATCCCTCTGTGGGGGCATTTGTAGCAGGAGGGTCAATCATCCAGGAAATTGATGCACACAAGAGTCTTATGTTTCCTGAGAAAAATACTATAAAAGACTGTGCGCCTGATACACTAGAGGCAGTCTCAGTACCAACTGCACCTTGTAGTGAAGATGAGAATTTTTCAATTAAGTTGGAGGGAAAATTGAAGAACGCAGTTGATTGTAGTGAAGATTCAAAATCAATGGCAATGGATGATGGTTCGGGCCAGACAGCAAGCCTTTGCACCAAGGTGCAAGATTGTGCTGAACAAGCTTGTTTGGGTTCTTTTCTTGCAAAAGAACGGGATGAAAGGATTCCAAACAAGGGTGGTTTGAGAGTAGAAAAATTTAAACACAATATCGTTGGCCCGAGTTCACGTTACTTGATTGGTGATGAGATGGACATCGGTGTGGATGGGGATGATGGGGTTGTTGAACCTAACCACCCTACTTCCTCAAGCTTGACAGACTCATCTAATGGCTCTGGTTCAATGATGCATAGCAATTCATCAGGTTCTGAGAGTTTCCAGAACCAGAACCAGTCCAAAGTCAAATCAACCATTGTTGATAGCGGGTCAATACTAATTGTCAAAGCCACCTACGGAGAAGACACAATTCGTTTCAAGTTTGATCCATCTGCAGGTTGTTTCAGGCTATATGAAGAAGTTGCAACAAGATTCAAACTACAAAATGGGTCATTCCAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACGCTGATTTGCAAGAGTGTATAGAAATATTGGATGATATTGGCACACGTAGCGTGAGGTTTCTTGTTCGTGATATGCCTTGCGTTTTAGGCAGTTCTGGCAGTAGCAATGGCTACTTGGGAGGCAGCTTATAG 2925 0.4178 MEYPFSPKGGGIGDWQSSRAQLEGSTSLDGGMRNSISEDMPNSFSELMNFDTYAGLCDSPSITDQILANELPSFASLPYPLPDGFNLVQQNSGQCYMSRVGKNNNDMESSPMYGEKVGCQQMDTLLGFFSNSNDGNNLNSKLKTNGSSQHSNAFDTGNYIMSRPPGLSLDERMLRALSFFKESAGGGILAQVWVPIKHGDQFILSTSEQPYLLDQMLAGYREVSRTFTFSAEGKSGCFLGLPGRVFTSKVPEWTSDVGYYSMSEYLRFEHAINHKVRGSIAFPIFDMHSELPCCAVLELVTTKEKADFDKELEIVCRALQLVNLRTTKPLRLLPECLSNNKKATLTEIVDVLRSVCHAHRLPLALTWIPCYTEGSRGEATRIQIKEGHSTSSEKGILCIEESACYITDRAMTGFVRACMEHHLEEGKGVAGKALQSNHPFFYPDVKTYDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPANMRGSSEQQLLLDNLSGTMQRICRSLRTVSDVELSGIGSSQVGFGKKNVPSFFPLSSRNSQIPLINGDRDSSQKMSLKATNLGNNEIEPSPSQERNGSKRQVQKNRSTLEKNVSLSVLQQYFSGSLKDAAKHIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLNSVQGVEGGLKFDPSVGAFVAGGSIIQEIDAHKSLMFPEKNTIKDCAPDTLEAVSVPTAPCSEDENFSIKLEGKLKNAVDCSEDSKSMAMDDGSGQTASLCTKVQDCAEQACLGSFLAKERDERIPNKGGLRVEKFKHNIVGPSSRYLIGDEMDIGVDGDDGVVEPNHPTSSSLTDSSNGSGSMMHSNSSGSESFQNQNQSKVKSTIVDSGSILIVKATYGEDTIRFKFDPSAGCFRLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVNDADLQECIEILDDIGTRSVRFLVRDMPCVLGSSGSSNGYLGGSL 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00307 974 MobiDBLite consensus disorder prediction 819 859 - -
Cca10g00307 974 MobiDBLite consensus disorder prediction 1 35 - -
Cca10g00307 974 MobiDBLite consensus disorder prediction 570 588 - -
Cca10g00307 974 MobiDBLite consensus disorder prediction 18 35 - -
Cca10g00307 974 Pfam PB1 domain 877 955 IPR000270 GO:0005515
Cca10g00307 974 ProSiteProfiles PB1 domain profile. 874 956 IPR000270 GO:0005515
Cca10g00307 974 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 739 968 - -
Cca10g00307 974 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 733 - -
Cca10g00307 974 MobiDBLite consensus disorder prediction 570 597 - -
Cca10g00307 974 Pfam RWP-RK domain 602 650 IPR003035 -
Cca10g00307 974 PANTHER PROTEIN NLP8 739 968 IPR045012 GO:0003700
Cca10g00307 974 PANTHER PROTEIN NLP8 5 733 IPR045012 GO:0003700
Cca10g00307 974 Gene3D - 872 954 - -
Cca10g00307 974 SUPERFAMILY CAD & PB1 domains 869 958 - -
Cca10g00307 974 CDD PB1_NLP 875 955 IPR034891 -
Cca10g00307 974 SMART PB1_new 874 956 IPR000270 GO:0005515
Cca10g00307 974 MobiDBLite consensus disorder prediction 827 859 - -
Cca10g00307 974 ProSiteProfiles RWP-RK domain profile. 584 670 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00307 Cca-Chr10 3243305 3249707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00307 1 974 NLP Transcription Factor Family AT2G43500 49.542 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Cca10g00307 PB1 3e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00307 - - gmx:100804426 1603.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00307 10 3243305 3249707 Cca04g00508 04 4956337 4961046 PCT