Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00299 ATGAATTGCTTATGCGAGAAAGACTCTGCTCTATTTTCTTCTCATTCAACATCCCCCTTTGTTCCTGGATGCCCAGCATGGGGGGCTTCTGAATCTGAAGTCAAACAATCTTCTATGTCCACAAGTTTGAGCTTCAAAGTGGATGTTATGCTTATGCCACCACAACACCACAAGAGCAAGACACCGAGTTTTCAATTCCAAGAACAGGATTCATCTTCAACTCAATCCACTGATCAATCTTATCCGGAAGTTGGTTCAGCACAATCCGGTCAAATTTCTGTCTATCATAGTTCAATTGGTTCAACACTTGGTAGTACTGGAGAAAAGAGTATGGGATGTGCCATCAGGTCATTTATGGGGAGTCAGGATTTCACCTTCCCTCCTCCACAACTGAATCATAGCCAATCACTTGCTCATCTTGCATTTCACTATGCTGACTCATGCTATACTGGCCAAATGGCTGCTGCATATGGTCCAAAGTCAAAGCCAGTGGAACCTGCTCCTGTTCGAATTCCTCTGCCACTGGATGTTACAGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGAAGACAGTATCGAGCAAAACTTGAAGCGCATAGCAAACCCCTCAAGGATCGAAAACCTTATCTTCATGAGTCGCGCCATCTACATGCAATAAAGAGAGCTAGAGGCGCTGGTGGTCGTTTTCTCAACACTAAAAAGCTCCAACAATCAAAGCTTACTTCAGCAAATCACTGCCTCACTCGCATGAATTTGAGTGCAGAATCTAAAATGCATCAAATGGAACAAAACTACATGAATGGTGCTGATCATGTCACATATGCTGCAAGGGATATGAAGAATTATACAGCAGATAAGGATGGTGGCACCACTCAGCACCATCTATCTGTCTACATGTGA 918 0.4336 MNCLCEKDSALFSSHSTSPFVPGCPAWGASESEVKQSSMSTSLSFKVDVMLMPPQHHKSKTPSFQFQEQDSSSTQSTDQSYPEVGSAQSGQISVYHSSIGSTLGSTGEKSMGCAIRSFMGSQDFTFPPPQLNHSQSLAHLAFHYADSCYTGQMAAAYGPKSKPVEPAPVRIPLPLDVTEEPIYVNSKQYHAILRRRQYRAKLEAHSKPLKDRKPYLHESRHLHAIKRARGAGGRFLNTKKLQQSKLTSANHCLTRMNLSAESKMHQMEQNYMNGADHVTYAARDMKNYTADKDGGTTQHHLSVYM 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00299 305 MobiDBLite consensus disorder prediction 58 89 - -
Cca10g00299 305 MobiDBLite consensus disorder prediction 55 89 - -
Cca10g00299 305 ProSitePatterns NF-YA/HAP2 subunit signature. 183 203 IPR018362 GO:0003677|GO:0016602
Cca10g00299 305 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 22 272 - -
Cca10g00299 305 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 180 235 IPR001289 GO:0003700|GO:0006355
Cca10g00299 305 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 22 272 IPR001289 GO:0003700|GO:0006355
Cca10g00299 305 PRINTS CCAAT-binding transcription factor subunit B signature 181 203 IPR001289 GO:0003700|GO:0006355
Cca10g00299 305 PRINTS CCAAT-binding transcription factor subunit B signature 212 235 IPR001289 GO:0003700|GO:0006355
Cca10g00299 305 ProSiteProfiles NF-YA/HAP2 family profile. 178 238 IPR001289 GO:0003700|GO:0006355
Cca10g00299 305 SMART cbf3 177 238 IPR001289 GO:0003700|GO:0006355
Cca10g00299 305 Gene3D - 178 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00299 Cca-Chr10 3199125 3201930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00299 14 244 CCAAT-HAP2 Transcription Factor Family AT1G17590 47.679 5.58e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Cca10g00299 CBFB_NFYA 3.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00299 K08064 - gmx:100803893 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00299 10 3199125 3201930 Cca10g00299 10 3199125 3201930 ECH
Cca10g00299 10 3199125 3201930 Cca11g00378 11 4935235 4940154 PCT
Cca04g00456 04 4508308 4510540 Cca10g00299 10 3199125 3201930 PCT