Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00298 ATGGAAGCGCGAACTCGCTCTGTAGAAGACATATTTGAGGATTTCAAGGGCCGAAGAGCGGGCATCATCAAGGCCCTTACCAGCGATGTTGAAGATTTCTACAGCCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATTACCTAATGAGCACTGGGAAGTAAATTTACCTGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTCCTGGGCATTAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGTTATCTTTAGTTGCTGTTCATAGTGACACATGGTTACTTGCCCTTGCCTTTTATTTTGGAGCCAGATTTGGATTTGATAAAACTGACAGGAAAAGACTATTCGGTATGATCAATGAACTACCAACAATATTTGAAGTTGTTAGTGGTGCAGCAAAGAAACAAGTTAAAGAGAAGTCTTCAGTTTCAAACAACAGTGGCAGCAAATCTAAGTCTTACTCTAAAGCGCGGGCTTCTGAAACCCAGGGTAGACAGTCAAAGGCATTACAAGCAAAAGATGAGGAGGAAGGACTAGAAGAGCAAGATGATGATGAACATGGAGAAACCTTGTGTGGGGCATGTGGTGAGAATTATGGTACTGATGAATTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGAAAATGCGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCACTACAAGTGTCCATCATGCAGTAACAAGAGAGCTCGCTAA 747 0.4337 MEARTRSVEDIFEDFKGRRAGIIKALTSDVEDFYSQCDPEKENLCLYGLPNEHWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLALAFYFGARFGFDKTDRKRLFGMINELPTIFEVVSGAAKKQVKEKSSVSNNSGSKSKSYSKARASETQGRQSKALQAKDEEEGLEEQDDDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKHYKCPSCSNKRAR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00298 248 Pfam PHD-finger 196 245 IPR019787 -
Cca10g00298 248 SMART PHD_3 195 243 IPR001965 -
Cca10g00298 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 244 IPR013083 -
Cca10g00298 248 MobiDBLite consensus disorder prediction 141 171 - -
Cca10g00298 248 SUPERFAMILY FYVE/PHD zinc finger 185 246 IPR011011 -
Cca10g00298 248 Pfam Alfin 7 134 IPR021998 GO:0006355|GO:0042393
Cca10g00298 248 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 248 - -
Cca10g00298 248 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Cca10g00298 248 MobiDBLite consensus disorder prediction 141 191 - -
Cca10g00298 248 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Cca10g00298 248 CDD PHD_AL_plant 195 245 IPR044104 -
Cca10g00298 248 PANTHER CPG BINDING PROTEIN 1 248 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00298 Cca-Chr10 3194144 3197856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00298 6 248 Alfin-like Transcription Factor Family AT3G42790 73.251 2.05e-120 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Cca10g00298 Alfin 7.1e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00298 - - gmx:100170696 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00377 11 4927048 4931890 Cca10g00298 10 3194144 3197856 ECH
Cca10g00298 10 3194144 3197856 Cca10g00298 10 3194144 3197856 ECH
Cca10g00298 10 3194144 3197856 Cca11g00377 11 4927048 4931890 PCT