Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00297 ATGAACATGGGTGCTACCGAGGAAGAAGAATCGGCTGCAGAACTTGTCCCCCCTGCGGAAATCGATTGGCAGAAGCTGGACAAGTCCAAGTTTTTCTGCCTCGGCGCAGCCCTATTCTCTGTGGTTTCCGCAACCCTATACCCCGTTGTTGTGTTGAAAACGCGGCAACAAGTTACGCCTTCTCAGCTTTCTTCCATAAAAAACGCGTTTTGGTTGATCAGAATGGAGGGTTTTAGGGCACTGTATAGAGGGTTTGGCACTTCTCTGATGGGCACAATCCCTGCTAGGGCTTTGTACATGGCTGCCCTTGAGATCACCAAGAGCAATGTAGGCACTGCCACTATTAGGTTAGGGTTTGCTGAACACACTGCTGCCACGATTGCCAATGCTGCTGCAGGGTTGAGTGCAGCCATGGCAGCTCAACTTGTGTGGACCCCAGTTGATGTTGTTAGTCAGAGGTTGATGGTTCAAAGTGGTGTTTCTAGTTCATCAACTCAATATGTTAATGGAATTGATGCCTTTAGGAAAATTGTCAAGAGTGATGGGGCTAGAGGGTTGTACAGGGGATTTGGGTTATCAATTTTGACCTATGCACCTTCAAATGCTGTTTGGTGGGCTTCATATTCTGTGGCACAGAGAATGGTGTGGGGTGGGGTACGGTGGTACTTGTGCAAGAAAAACGGTGGTGGTGAGAGTGAATATTTGAGGCCGAATTCTAAGCTAGTGATGGGGGTTCAGGGAGTGAGTGCAGCAATGGCTGGTGGCATGTCTGCTTTGATAACCATGCCATTTGACACCATTAAGACAAGGCTTCAAGTGTTGGATCATGGACGCCGTGGACCAACGGTGGTGCAGACAGTGAGGAATTTGGTTAGGGAGGGTGGTTGGATGGCATGTTATAGAGGGTTGGGACCTAGATGGGCTTCAATGTCTGTCTCAGCAACCACTATGATCACTACTTATGAGTTCGTTAAACGACTTTCCACCAAAAATCAAGAGGTTTTCACTTAA 1011 0.4797 MNMGATEEEESAAELVPPAEIDWQKLDKSKFFCLGAALFSVVSATLYPVVVLKTRQQVTPSQLSSIKNAFWLIRMEGFRALYRGFGTSLMGTIPARALYMAALEITKSNVGTATIRLGFAEHTAATIANAAAGLSAAMAAQLVWTPVDVVSQRLMVQSGVSSSSTQYVNGIDAFRKIVKSDGARGLYRGFGLSILTYAPSNAVWWASYSVAQRMVWGGVRWYLCKKNGGGESEYLRPNSKLVMGVQGVSAAMAGGMSALITMPFDTIKTRLQVLDHGRRGPTVVQTVRNLVREGGWMACYRGLGPRWASMSVSATTMITTYEFVKRLSTKNQEVFT 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00297 336 ProSiteProfiles Solute carrier (Solcar) repeat profile. 241 327 IPR018108 -
Cca10g00297 336 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 109 IPR018108 -
Cca10g00297 336 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 3 333 - -
Cca10g00297 336 SUPERFAMILY Mitochondrial carrier 24 324 IPR023395 -
Cca10g00297 336 Pfam Mitochondrial carrier protein 246 331 IPR018108 -
Cca10g00297 336 Pfam Mitochondrial carrier protein 34 109 IPR018108 -
Cca10g00297 336 Pfam Mitochondrial carrier protein 126 215 IPR018108 -
Cca10g00297 336 Gene3D Mitochondrial carrier domain 29 335 IPR023395 -
Cca10g00297 336 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 214 IPR018108 -
Cca10g00297 336 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 3 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00297 Cca-Chr10 3190003 3191522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00297 1 335 Chloroplast and Mitochondria Gene Families AT1G72820 71.387 1.04e-172 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00297 K15121 - gmx:100803360 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00375 11 4917794 4918825 Cca10g00297 10 3190003 3191522 ECH
Cca10g00297 10 3190003 3191522 Cca10g00297 10 3190003 3191522 ECH