Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00294 ATGGATTCAAAGGTGGTGGAAGAAGAAGAGTTGACCATCATCGCCATTGATGGCGACAAGAACAGCCAACATGCTGTCAAATGGGCTGTGGAACATCTCTTGAAGAAAAACTCCTCTTGCACCCTCATTCACGTCACAACCAACAACTTGTTTCCCAATAATTTTGAGGCTCTCCCTAAACAAAGTCGTCCACCAACTGAAGACGAATTGCAACAATTTTTTCTTCCCTTTCGAGGATTTTGTGCTCGAAAAGGGATCGTAGCTAAGGAGTTAGTCCTGCATGGTGTTGATGTTGCAAAAGTGCTTACTGAGTACATCATTCACAACTCTATCAACAATATTGTTGTTGGCGCGTCTCGTTGGAATGCTTTTATAAGGAAATTTAAAGATGTAGATGTGCCAACAAGCTTAATCAAGTACGTGCCAGAGACTTGCGCGATTCATGTTATATCAAAAAGAAAAGTGCAGAATATTCGACCAGCATGTCAATCTAAAAATATTAGTATCGCACCATCAAAATCTTTGAAAGACATAAAGGGAAGATATGAGCCCGAAGTTTTAAACAGAAAATCAAAATCATTAAAGTATGGATTTTGGCAAGGCTCAAGCAATGATGGGGTATTTTTTGGTCAAAACAAGGATCCTACACAGGTGACACCACATATAACCAATGGAGAGACTACTTCTCCAAAACTATCAGATGAAAGCTACTCCTCACAAAATTCATCCGATCGAAGTTCCCTAACCGGTGACACTCCAAGGCTACATGGTGATCAATTGACCGAGACATTACATGAAAACCAAGATGTAGTCCAAAACTCGGACAATTTAATTTGTAGGAGCAATTCTTCTAAAAAGTCCACAAAAAGCTTGGAGATGGAAATAAAGAAACTAAAACTAGAACAGAAGGGAGAGATAAAGAAGTGTAGTTCAACCTGCAAGGTAGCTGCAACAACAAAACAGAAGGCAATAAAGCTGGAAAATTTTAGGCAAGAAGAATGGGACATAGAAAAGGCTAGGCTTGCTGAAGAGACTTTGGAGTCAACTGAAATGTCAAAACGCATGGCAGAAATCAAGAGCCAGAAAGGAAAGCAAACCGAAACAAGAGCCATACACGAGGAAGAAGAAAGGAACATAACATTAAATGCAAGTGCACCCGACAAACCTCTATTTAAAAGATACAATATTAAAGAAATTGAAGTTGCAACTAATTACTTTGACAATGACCTCCAAATTGGTGAAGGGGGATATGGACCTGTTTTTAAAGGAGTGCTTGATGACATTGATGTTGCTATTAAGGCCCTCAGACCAGACATAACTCAAGGGGAGAAGCAATTTCATCAAGAGGTTACTGTTTTGAGCACAATAAGACATCCGAATATGGTTAAACTTCTAGGTGCTTGTCCAGAATTCGGATGCCTTGTATATGAATATGTGGAAAATGGAAGCTTAGAAGACCGACTCTTCCAGAAAGATAACACTCCAACAATTCCATGGAAAGTTCGATTCAAAATAGCATCAGAAATTGCCACTGGCCTTCTTTTCCTTCACCAAACAAAGCCTGAGCCGATTGTGCACCGTGATCTGAAGCCAGCAAACATTTTGTTGGACCGAAACTATGGAAGCAAGATCACTGATGTGGGTTTGGCGAGGCTAGTTCCTCCAAGTGTAGCCAACAAAACCACTGAATACTACAAGACAACTGCAGCTGGTACATTTTGCTACATTGACCCAGAATATCAACAAACAGGACTATTGGGTGTAAAATCAGACATATATTCATTAGGTGTAATGTTGCTACAAATTATCACTGGAAAGCCTCCTATGGGTGTGGCTCACCTGGTTCAGGATGCCATAAACAAAGGTGAATTCAAAGAGGTGCTTGATCCAAATGTGACTGATTGGCCCCTTGAAGAGACTTTATCATATGCTAGGTTGGCTTTGAAGTGTTGTGAGATGAAAAAACGAGATAGACCAAACCTTGCTTCTGTCATTTTGCCAGAGTTGATTCGACTCCGAAATCTAGGAGAAGTAGCCATTGACATTGATATTGTATCCGCCAAACAGGAAGGAAATGAATAA 2082 0.4015 MDSKVVEEEELTIIAIDGDKNSQHAVKWAVEHLLKKNSSCTLIHVTTNNLFPNNFEALPKQSRPPTEDELQQFFLPFRGFCARKGIVAKELVLHGVDVAKVLTEYIIHNSINNIVVGASRWNAFIRKFKDVDVPTSLIKYVPETCAIHVISKRKVQNIRPACQSKNISIAPSKSLKDIKGRYEPEVLNRKSKSLKYGFWQGSSNDGVFFGQNKDPTQVTPHITNGETTSPKLSDESYSSQNSSDRSSLTGDTPRLHGDQLTETLHENQDVVQNSDNLICRSNSSKKSTKSLEMEIKKLKLEQKGEIKKCSSTCKVAATTKQKAIKLENFRQEEWDIEKARLAEETLESTEMSKRMAEIKSQKGKQTETRAIHEEEERNITLNASAPDKPLFKRYNIKEIEVATNYFDNDLQIGEGGYGPVFKGVLDDIDVAIKALRPDITQGEKQFHQEVTVLSTIRHPNMVKLLGACPEFGCLVYEYVENGSLEDRLFQKDNTPTIPWKVRFKIASEIATGLLFLHQTKPEPIVHRDLKPANILLDRNYGSKITDVGLARLVPPSVANKTTEYYKTTAAGTFCYIDPEYQQTGLLGVKSDIYSLGVMLLQIITGKPPMGVAHLVQDAINKGEFKEVLDPNVTDWPLEETLSYARLALKCCEMKKRDRPNLASVILPELIRLRNLGEVAIDIDIVSAKQEGNE 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00294 693 PANTHER OS02G0152300 PROTEIN 11 677 - -
Cca10g00294 693 ProSiteProfiles Protein kinase domain profile. 406 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00294 693 Gene3D Transferase(Phosphotransferase) domain 1 479 679 - -
Cca10g00294 693 Pfam Protein kinase domain 409 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00294 693 Gene3D Phosphorylase Kinase; domain 1 384 478 - -
Cca10g00294 693 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 14 128 - -
Cca10g00294 693 MobiDBLite consensus disorder prediction 209 256 - -
Cca10g00294 693 SMART serkin_6 406 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00294 693 CDD STK_N 14 152 - -
Cca10g00294 693 SUPERFAMILY Protein kinase-like (PK-like) 388 665 IPR011009 -
Cca10g00294 693 MobiDBLite consensus disorder prediction 209 257 - -
Cca10g00294 693 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 11 677 - -
Cca10g00294 693 Gene3D HUPs 12 149 IPR014729 -
Cca10g00294 693 Pfam Universal stress protein family 14 126 IPR006016 -
Cca10g00294 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00294 Cca-Chr10 3174566 3178647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00294 2 676 Receptor kinase-like Gene Family AT1G17540 44.936 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Cca10g00294 Pkinase 7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00294 - - gmx:100814365 930.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00367 11 4784459 4788919 Cca10g00294 10 3174566 3178647 PCT