Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00289 ATGTTTTATTCTTGTTCTAAAGGTTTTGAGAGGCCTTCTGCAATACAGCAGAGGGGAATTGTTCCTTTCTGCAAAGGTCTGGACGTGATTCAGCAGGCTCAGTCAGGAACTGGGAAGACAGCAACTTTCTGTTCTGGAATTTTGCAGCAGCTTGATTATGATTTGGTTCAGTGTCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTTGCACAGCAGATTGAGAAGGTCATGCGAGCTCTAGGTGATTACCTTGGTGTCAAGGTTCATGCTTGTGTTGGTGGGACCAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTACATACTGTTGTTGGCACTCCTGGGCGTGTGTTTGATATGCTACGTAGACAGTCTCTTCGCCCAGATCACATAAGGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGCTTCAAGGATCAGATCTATGACATCTTCCAGCTACTGCCAGGTAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCTGAAGCCTTGGAGATTACAAGGAAGTTTATgaataagccagtgagaatcttggtgaagcgtgatgagttgacccttgagggtatcaagcagttttacgtgaatgttgataaggaagattggaaactagagacactgtgtgacctttatgagactctggctatcacccagagtgtcatctttgtgaacacaaggcgcaaggTGGACTGGCTCACTGACAAGATGCGAAGCAATGACCACACTGTCTCAGCCACTCATGGAGACATGGATCAAAACACTCGTGACATCATCATGCGTGAATTTCGCTCTGGCTCTTCTCGAGTTCTGATTACCACTGATCTCTTGGCACGTGGTATAGATGTGCAGCAAGTGTCTTTGGTTATAAACTATGATCTTCCTACCCAACCTGAGAATTATCTTCACCGCATAGGCCGAAGTGGGCGTTTTGGTAGAAAGGGTGTTGCCATAAACTTTGTGACATTGGACGACTCAAGAATGCTGTCTGATATTCAGAAGTTCTACAATGTGACAGTAGAGGAGTTGCCATCAAATGTTGCTGATCTGCTCTGA 1089 0.3866 MFYSCSKGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYDLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDHIRMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSRMLSDIQKFYNVTVEELPSNVADLL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00289 362 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 20 190 IPR014001 -
Cca10g00289 362 CDD SF2_C_DEAD 202 332 - -
Cca10g00289 362 Pfam Helicase conserved C-terminal domain 215 323 IPR001650 -
Cca10g00289 362 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 136 144 IPR000629 -
Cca10g00289 362 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 201 362 IPR001650 -
Cca10g00289 362 PANTHER RNA HELICASE 7 362 - -
Cca10g00289 362 Gene3D - 198 362 IPR027417 -
Cca10g00289 362 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 7 362 - -
Cca10g00289 362 Pfam DEAD/DEAH box helicase 14 175 IPR011545 GO:0003676|GO:0005524
Cca10g00289 362 CDD DEADc_EIF4A 6 191 - -
Cca10g00289 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 343 IPR027417 -
Cca10g00289 362 SMART helicmild6 242 323 IPR001650 -
Cca10g00289 362 Gene3D - 3 197 IPR027417 -
Cca10g00289 362 SMART ultradead3 8 205 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00289 Cca-Chr10 3115786 3118905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00289 8 362 Eukaryotic Initiation Factors Gene Family AT1G72730 92.394 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00289 K03257 - gmx:100777628 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00289 10 3115786 3118905 Cca11g00355 11 4610979 4614285 PCT