Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00286 ATGGCACGGGGGAGGATCAGGGCAAAGCTCCGCAGGAGCCATCTTTACACATTTGGTTGCCTTAAGCCAACCACCACTGAGGAGGTGCCTCATCCACTTCAAGGTCCAGGCTACTCGCGAACAGTTTACTGTAACCAGCCTCTACTCCATGACAAAAAATCTCTGTTTTACTGCAAGAATGATATATCAACCACCAAATACAATGTCATCACGTTTTTGCCTAAGGCATTGTTTGAACAATTTCGGAGGGTTGCTAATATATACTTCCTTTTGGCTGCTTGCCTCTCCGCCTCTCCAATTTCACCTTTCAGCTCTCTCAGCATGATTGCCCCTTTGGCGTTTGTTGTGGGGCTTAGTATGGCAAAGGAGGCATTGGAGGATTCGCGCCGGTTCCTTCAGGATGTTAAGGTTAATCGCAGGAAAGTTAGTTTCCACAAAGGTGATGGCGAATTTGGTCTCAGGTCGTGGCAGAATATTATGGTTGGGGATGTGGTAAAAGTAGAAAAGGACCAGTTTTTTCCCGCTGACTTGCTTCTGTTGGCGTCAAGTTATGAGGATGGGATATGCTATGTGGAGACAATGAATTTAGATGGGGAGACCAACTTGAAGGTGAAGAGATCATTGGAGGCTACCTTGTCTCTGGATAATGATGGAGCTTTTAAGGATTTCTCTGGAACAATATATTGTGAAGATCCAAATCCCAGTCTTTACACTTTTATTGGGAACTTTGAGTACGAACAACAGGTTTATCCTCTTGATCCTAGTCAAATACTCCTCCGAGATTCAAAGCTCAGGAACACGGATCATGTCTATGGAGTGGTCATTTTCACTGGACATGACAGCAAAGTTATGCAGAATTCTACAAAATCCCCTTCAAAAAGAAGCACAATTGAGAAAAAGATGGATTATATCATATACACTCTTTTCACTGTTCTTATATTGATATCTTTTATTAGTTCAATAGGATTTGTTACAAAGACCAAATACGAAACCCCAAAGTGGTGGTATTTACGGCCTGACAATATTGAATACCAGTATGATCCTGGTAAAATTGGATTGGCTGGGATGAGCCATCTGATTACTGCACTCATTCTTTACGGATATTTGATACCCATTTCGCTTTATGTTTCAATTGAGGTTGTGAAGGTATTACAGGCAACCTTCATTAACCAAGACATTCAAATGTATGATGATGAAACTGGGACTCCAGCTGATGCACGAACATCAAATTTGAATGAAGAGTTGGGCCAGGTAGACACTATCCTCTCTGATAAAACTGGCACTTTAACTTGCAACCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTGCATATGGTGTTCGCTCCAGTGAAGTTGAAGTTGCTGCAGCGAAGCAGATGGCTTCTGATCTTGAGGAGCAGGACGAGGAGTTCTCTAGTTTCCCCATGTGTAAGGAGAGAAAAGTGTCATGGGAAAACACCACAGTAGATGAAGAAATTGAACTGGGGACTGTTGTTCCTTCCAAAAATGATGAAGATCAAAGGCCTGCCATAAAGGGATTTGGGTTTGAAGATGATCGCCTTATGAATGGTAACTGGTTGAAAGAACCCGACACCAATGTCCTTTTGTTGTTTTTCCGGATATTAGCAGTTTGCCATACTGCCATTCCTGAACTGAATGAGGAGACCGACAGTTGTACATATGAAGCCGAATCACCCGATGAAGGGGCTTTTCTAGTAGCAGCTAGAGAATTTGGTTTTGAATTTTATAGGAGAACTCAATCAAGTGTCATCATTCGTGAAAGATTTTCTGCTTCAGGACAAGTGGTTCAAAGAGAATATAAAATTTTGAATCTGCTGGATTTTACTAGCAAAAGAAAGCGCATGTCAGTGATTGTGCGTGACGAGGATGGAAGCATTATTCTTTTCTGCAAAGGAGCCGACAGTATCATATTTGATCGACTGTCTAAGAATGGAAAAATGTATTTAGAGGCTACAACTAGACATTTGAATGAATATGGAGAAGCAGGTTTGAGAACACTTGCCCTGGCTTACAGAAAGCTTGATGAACAAGAGTACTTTGATTGGAATAACAAGTTTCAGAAGGCCAAGACAGCTGTTGGGCCTGACAGAGATGCAATGCTTGAGCATGTTTCAGATATTATGGAAAGAGAGTTGATTCTTGTTGGAGCTACCGCTGTTGAAGATAAACTACAGAAAGGGGTGCCTCAATGCATTGATAAACTTGCTCaagctggtctaaagctctgggtattgactggtgataagatggaaactgcaatcaacattggTTTCGCTTGTAGTTTGCTTCGACAGGGCATGAAGCAAATCTGTATCACAACGAATTCAGATCCAGCAATTAATGATGGGAAAGAGGTCATTAAAGGCAGCATCTTGAATCAAATCACCAATGCCACACAACTGATAAAGCTGGAAAAAGATCCACATGCAGCGTTTGCACTAATTATTGATGGGAAAACTCTAACATATGCCTTAGAAGATGATGTCAAGCACCAATTTTTGGGATTGGCTGTTGATTGTGCATCTGTTATTTGCTGTCGTGTGTCTCCAAAGCAAAAAGCATTGTGTATGAGCATATATAAAATGTGTACTGCTTTGTTGCTTTATTGGAATCGGGTAACAAGGTTAGTGAAGGAAGGAACTGGGAAGACCACTTTAGCCATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCTGACATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTAATGGCTAGTGACTTTGCTATTGCCCAATTCCGGTTTTTGGAGCGGCTTCTGGTAGTCCATGGACACTGGTGTTACAAGAGAATTGCACAAATGATATGTTATTTCTTCTACAAAAATATAGCGTTTGGCCTCACCATATTCTATTTCGAGGCCTTTGCGGGCTTCTCTGGACAATCGGTTTATGATGACTGGTACATGATATTATTCAATGTTGTTCTTACATCATTGCCTGTCATTTCTCTTGGGGTTTTTGAACAAGATGTTCCGTCAGAAGTTTGCTTACAGTTTCCTGCATTGTATCAGCAGGGACCCAAAAATTTGTTTTTTGACTGGTATAGAATCTTGGGATGGATGGGGAATGGTCTTTATTCCTCCCtcatcatcttcttcctcgtcgtcatcatcttcTATGACCAAGCCTTCCGTGCGAATGGCCAGATTGCAGACATGGCTGCTGTCGGTACCACGATGTTCACTTGCATCGTCTGGGCAGTCAATTGCCAAATTGCACTGACAATGAGCCACTTCACATGGATTCAGCACCTCTTTGTGTGGGGCAGCATAACCGCTTGGTATCTCTTTCTCATGTTATACGGCGTTCTTCCACCACGATATTCCAAGACTGCGTACCAAATATTGGTTGAGGTTCTTGCTCCTGCTCCTATTTATTGGACAACAACCCTATTAATAACAATCACATGTGTTCTTCCTTATCTTGCCCATATATCCTTCCAAAGATGTTTTAATCCCATGGATCATCACATTATCCAAGAAATCAAGTACTACAAGAAGGACATTGAAGATCAACACATGTGGACGAGGGAGCGTTCTAAAGCAAGGCAGGAAACGAAGATTGGATTCACGGCAAGAGTAGAAGCAAAGATCAGGCACTTTAAAGGTAAGCTGCAGAAGAAGCAGTCTCTGGGGGTTTTGTCCCCATCATGA 3717 0.4103 MARGRIRAKLRRSHLYTFGCLKPTTTEEVPHPLQGPGYSRTVYCNQPLLHDKKSLFYCKNDISTTKYNVITFLPKALFEQFRRVANIYFLLAACLSASPISPFSSLSMIAPLAFVVGLSMAKEALEDSRRFLQDVKVNRRKVSFHKGDGEFGLRSWQNIMVGDVVKVEKDQFFPADLLLLASSYEDGICYVETMNLDGETNLKVKRSLEATLSLDNDGAFKDFSGTIYCEDPNPSLYTFIGNFEYEQQVYPLDPSQILLRDSKLRNTDHVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISFISSIGFVTKTKYETPKWWYLRPDNIEYQYDPGKIGLAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFINQDIQMYDDETGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSEVEVAAAKQMASDLEEQDEEFSSFPMCKERKVSWENTTVDEEIELGTVVPSKNDEDQRPAIKGFGFEDDRLMNGNWLKEPDTNVLLLFFRILAVCHTAIPELNEETDSCTYEAESPDEGAFLVAAREFGFEFYRRTQSSVIIRERFSASGQVVQREYKILNLLDFTSKRKRMSVIVRDEDGSIILFCKGADSIIFDRLSKNGKMYLEATTRHLNEYGEAGLRTLALAYRKLDEQEYFDWNNKFQKAKTAVGPDRDAMLEHVSDIMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKLWVLTGDKMETAINIGFACSLLRQGMKQICITTNSDPAINDGKEVIKGSILNQITNATQLIKLEKDPHAAFALIIDGKTLTYALEDDVKHQFLGLAVDCASVICCRVSPKQKALCMSIYKMCTALLLYWNRVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFAIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLIIFFLVVIIFYDQAFRANGQIADMAAVGTTMFTCIVWAVNCQIALTMSHFTWIQHLFVWGSITAWYLFLMLYGVLPPRYSKTAYQILVEVLAPAPIYWTTTLLITITCVLPYLAHISFQRCFNPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQETKIGFTARVEAKIRHFKGKLQKKQSLGVLSPS 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00286 1238 Gene3D - 419 431 IPR023214 -
Cca10g00286 1238 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 1170 IPR023298 -
Cca10g00286 1238 Pfam Phospholipid-translocating P-type ATPase C-terminal 924 1174 IPR032630 -
Cca10g00286 1238 Gene3D - 577 700 IPR023299 GO:0000166
Cca10g00286 1238 SUPERFAMILY Calcium ATPase, transduction domain A 147 286 IPR008250 -
Cca10g00286 1238 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Cca10g00286 1238 PRINTS P-type cation-transporting ATPase superfamily signature 896 915 - -
Cca10g00286 1238 SUPERFAMILY HAD-like 417 951 IPR036412 -
Cca10g00286 1238 Pfam Cation transport ATPase (P-type) 545 650 - -
Cca10g00286 1238 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1232 - -
Cca10g00286 1238 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1232 - -
Cca10g00286 1238 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 889 977 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca10g00286 1238 Gene3D - 432 460 IPR023299 GO:0000166
Cca10g00286 1238 SFLD p-type atpase 405 947 IPR044492 -
Cca10g00286 1238 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Cca10g00286 1238 Gene3D - 719 936 IPR023214 -
Cca10g00286 1238 Coils Coil 448 468 - -
Cca10g00286 1238 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 522 685 IPR023299 GO:0000166
Cca10g00286 1238 CDD P-type_ATPase_APLT_Dnf-like 60 1056 - -
Cca10g00286 1238 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 57 1182 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cca10g00286 1238 Gene3D - 112 288 - -
Cca10g00286 1238 SFLD C1.7: P-type atpase like 405 947 - -
Cca10g00286 1238 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00286 Cca-Chr10 3094095 3099927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00286 1 1231 Primary Pumps ATPases AT1G17500 74.980 0.0 1923
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00286 K01530 - gmx:100778710 2245.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00286 10 3094095 3099927 Cca11g00352 11 4588500 4596075 PCT