Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00280 ATGGGTGCTTCGGGAAAGTGGTTTAAGTCGCTTCTTCATTTTCGAAAGAACTCAACTGATCAAGAGAAGGGTGGTGAGAACAAGAGTAAGAAGAAGTGGAAGCTATGGAGGGCTTCTTCAGAAGGGTCCATGAAGAAAGTTGGTGCTGCTGCTGTACCTGATTCTTCCCTTACTTATGCAGTGGCTGTGATGGTTCCCAAAGATTTCAAGATCATCAAGCAGGAATGGGCTGCCATTCGCATTCAGGCAGTATTTCGAGCCTTCTTGGCTAGGCGAGCTTTGAGGGCCTTGAGGGCAGTGGTAAGGCTACAAGCTATTTTTCGGGGCCGGCTAGTAAGAAAGCAAGCAGCAGTTACTCTAAGGTGCATGCAGGCTCTTGTTCGTGTTCAGGCACGTGTGAGGGCAAGGAATGTGAGGAATTCCCCTGAAGGAAAAGCAGTGCAGAAATTATTAGATGATCATCGCAACCAACCTGATCCTTTCAAGCAGATTGAGCAAAGGTGGTGTGACATTCCTGGAACAGTGGATGAAGTTAAAGCAAAGCTACGAATGAGACAAGAAGGAGCCATCAAGAGGGATAGAGCAATGGCATACTCTCTGTCCACACAGCAGTCAAGATTATGTGCTAGTCCAAACACAAAAGGCACCAAGGCATTGACTCCTCTCAAGCATCACAACCTAAGCAATAAGAGCTTAGGATGTAGCTTGTTAGAACGGTGGATGGAGACCAAGCCTTGGGAGAGTCCTATTTCCAGGAAGAGTGAAGACCTTGTTCCTGCTTTTCAATCAAGAAGGAATGGTGTGACAACTAGGATTTCGCTTAAATCTCTTGCAACTATATCAACGCCATCATCTTCAGCTATAAGCTCTGAATACATGTGTGATGATAGCCCTGTGTCAACATCTTGTACATCTAGATCTCCATCTTTGCCATCCACAAGTACTGTTTTGGTGGAAGCAACGGAGGAAAGAGATGTTCATCAACCAAGCTACATGAATTTGACAGAGACAACCAAGGCTAAACTGAAAGCTTGCAGGAGTTCTTCACTGAATTCAAAGAAACTTGTTATGGAGGAGTGTCCATCTCACAGTTCAACAACAGGCTTTTTGAATGGAGATTCTAGAAGTAGTTCTAATTCTGATCCTTCAGTTAACTTATGGAAGGATTCTTGTGCAACACCTTTAAGGGCCAGTTATCAAAAACGAGAAATTAGGATATGA 1221 0.4431 MGASGKWFKSLLHFRKNSTDQEKGGENKSKKKWKLWRASSEGSMKKVGAAAVPDSSLTYAVAVMVPKDFKIIKQEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQARVRARNVRNSPEGKAVQKLLDDHRNQPDPFKQIEQRWCDIPGTVDEVKAKLRMRQEGAIKRDRAMAYSLSTQQSRLCASPNTKGTKALTPLKHHNLSNKSLGCSLLERWMETKPWESPISRKSEDLVPAFQSRRNGVTTRISLKSLATISTPSSSAISSEYMCDDSPVSTSCTSRSPSLPSTSTVLVEATEERDVHQPSYMNLTETTKAKLKACRSSSLNSKKLVMEECPSHSSTTGFLNGDSRSSSNSDPSVNLWKDSCATPLRASYQKREIRI 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00280 406 ProSiteProfiles IQ motif profile. 98 125 IPR000048 GO:0005515
Cca10g00280 406 Pfam IQ calmodulin-binding motif 76 95 IPR000048 GO:0005515
Cca10g00280 406 Pfam IQ calmodulin-binding motif 98 115 IPR000048 GO:0005515
Cca10g00280 406 Gene3D - 74 116 - -
Cca10g00280 406 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 402 - -
Cca10g00280 406 PANTHER IQ-DOMAIN 5-RELATED 1 402 - -
Cca10g00280 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 116 IPR027417 -
Cca10g00280 406 SMART iq_5 73 95 IPR000048 GO:0005515
Cca10g00280 406 SMART iq_5 96 117 IPR000048 GO:0005515
Cca10g00280 406 MobiDBLite consensus disorder prediction 362 383 - -
Cca10g00280 406 ProSiteProfiles IQ motif profile. 74 102 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00280 Cca-Chr10 3039295 3041767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00280 1 389 IQD Protein Family AT1G72670 43.765 4.79e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00280 - - gmx:100788715 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00280 10 3039295 3041767 Cca11g00345 11 4468620 4471523 PCT