LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca10g00280	ATGGGTGCTTCGGGAAAGTGGTTTAAGTCGCTTCTTCATTTTCGAAAGAACTCAACTGATCAAGAGAAGGGTGGTGAGAACAAGAGTAAGAAGAAGTGGAAGCTATGGAGGGCTTCTTCAGAAGGGTCCATGAAGAAAGTTGGTGCTGCTGCTGTACCTGATTCTTCCCTTACTTATGCAGTGGCTGTGATGGTTCCCAAAGATTTCAAGATCATCAAGCAGGAATGGGCTGCCATTCGCATTCAGGCAGTATTTCGAGCCTTCTTGGCTAGGCGAGCTTTGAGGGCCTTGAGGGCAGTGGTAAGGCTACAAGCTATTTTTCGGGGCCGGCTAGTAAGAAAGCAAGCAGCAGTTACTCTAAGGTGCATGCAGGCTCTTGTTCGTGTTCAGGCACGTGTGAGGGCAAGGAATGTGAGGAATTCCCCTGAAGGAAAAGCAGTGCAGAAATTATTAGATGATCATCGCAACCAACCTGATCCTTTCAAGCAGATTGAGCAAAGGTGGTGTGACATTCCTGGAACAGTGGATGAAGTTAAAGCAAAGCTACGAATGAGACAAGAAGGAGCCATCAAGAGGGATAGAGCAATGGCATACTCTCTGTCCACACAGCAGTCAAGATTATGTGCTAGTCCAAACACAAAAGGCACCAAGGCATTGACTCCTCTCAAGCATCACAACCTAAGCAATAAGAGCTTAGGATGTAGCTTGTTAGAACGGTGGATGGAGACCAAGCCTTGGGAGAGTCCTATTTCCAGGAAGAGTGAAGACCTTGTTCCTGCTTTTCAATCAAGAAGGAATGGTGTGACAACTAGGATTTCGCTTAAATCTCTTGCAACTATATCAACGCCATCATCTTCAGCTATAAGCTCTGAATACATGTGTGATGATAGCCCTGTGTCAACATCTTGTACATCTAGATCTCCATCTTTGCCATCCACAAGTACTGTTTTGGTGGAAGCAACGGAGGAAAGAGATGTTCATCAACCAAGCTACATGAATTTGACAGAGACAACCAAGGCTAAACTGAAAGCTTGCAGGAGTTCTTCACTGAATTCAAAGAAACTTGTTATGGAGGAGTGTCCATCTCACAGTTCAACAACAGGCTTTTTGAATGGAGATTCTAGAAGTAGTTCTAATTCTGATCCTTCAGTTAACTTATGGAAGGATTCTTGTGCAACACCTTTAAGGGCCAGTTATCAAAAACGAGAAATTAGGATATGA	1221	0.4431	MGASGKWFKSLLHFRKNSTDQEKGGENKSKKKWKLWRASSEGSMKKVGAAAVPDSSLTYAVAVMVPKDFKIIKQEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQARVRARNVRNSPEGKAVQKLLDDHRNQPDPFKQIEQRWCDIPGTVDEVKAKLRMRQEGAIKRDRAMAYSLSTQQSRLCASPNTKGTKALTPLKHHNLSNKSLGCSLLERWMETKPWESPISRKSEDLVPAFQSRRNGVTTRISLKSLATISTPSSSAISSEYMCDDSPVSTSCTSRSPSLPSTSTVLVEATEERDVHQPSYMNLTETTKAKLKACRSSSLNSKKLVMEECPSHSSTTGFLNGDSRSSSNSDPSVNLWKDSCATPLRASYQKREIRI	406

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca10g00280	406	ProSiteProfiles	IQ motif profile.	98	125	IPR000048	GO:0005515
Cca10g00280	406	Pfam	IQ calmodulin-binding motif	76	95	IPR000048	GO:0005515
Cca10g00280	406	Pfam	IQ calmodulin-binding motif	98	115	IPR000048	GO:0005515
Cca10g00280	406	Gene3D	-	74	116	-	-
Cca10g00280	406	PANTHER	IQ CALMODULIN-BINDING MOTIF PROTEIN	1	402	-	-
Cca10g00280	406	PANTHER	IQ-DOMAIN 5-RELATED	1	402	-	-
Cca10g00280	406	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	70	116	IPR027417	-
Cca10g00280	406	SMART	iq_5	73	95	IPR000048	GO:0005515
Cca10g00280	406	SMART	iq_5	96	117	IPR000048	GO:0005515
Cca10g00280	406	MobiDBLite	consensus disorder prediction	362	383	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca10g00280	Cca-Chr10	3039295	3041767	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca10g00280	1	389	IQD Protein Family	AT1G72670	43.765	4.79e-88	271

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca10g00280	-		-	gmx:100788715	589.341

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca10g00280	10	3039295	3041767	Cca11g00345	11	4468620	4471523	PCT

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