Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00279 ATGAGAGTTCATCACAAAAATTTGACCTCCCTTATTGGTTATTGTAATGAAGGAACCAATAAGGGTCTCATATATGAGTACATGGCTAATGGAAACTTACAAGAACATCTTTCTGGTAAACGCAGCAAAACAAAATTTTTCAGCTGGGAAGACAGACTTCGTATTGCAGTGGATGCAGCCTCAGGATTGGAGTACCTGCAAAATGGTTGCAAGCCTCCTATATtccacagggacataaaatctacaaacatcttgttgaatgaacactttcaagcaaagttatctgattttggtctatccaaaattatcccatctgaatggggaactcatgtgtcaactgttattgccggtactccgggttatctcgaccctgaGTACTACACAACCAATAGATTAACAGAGAAGAGTGATGTTTATAGCTTCGGTGTTGTTCTTTTGGAGATAATCACAAGTAAACCAGTGATAACAAAAAATCAAGAAAAAACTCATATAAGTGAATGGGTTAAATCCTTGGTTGCGAAAGGTGATATCAAGGCCATTGTTGACTCAAGGTTAGATGGAGAGTTTGATAGTAACTCAGTCTGGAAAGTAGTAGAAATAGCAATGGCCTCTGTGTCTCCAAATCCCAACAACAGGCCAATCATAAGTGAGATAGTCACCGAACTGAAGGAGTCTTTAGCAATGGAATTAGGTCGGACTAAATACAGCAGTGCCGATACTAGAGATTCAATTAAACCTGTCACCGTGAATCTGAATACTGAATTTATTCCCCAGGCTAGaattaaaagaaaactaaagaatcaacattcaagtgaacagaATTCCTTCACTTTCGGCCTCAATCTTCTCTTTGCCCAGCTACATTCGTTGGAAGTCTTGATTTCACCATCTCAAGTTTTTTCCTCTGTCTCTTCACGCTCGAGGACTATAAAGCTGCCTAATGCCTCTTCCAAACTTGTACAGTATAAAAGAGAACCTGACATTTTACTACTACCAGGAATGGGAATATCTGCAAGAAGCAAGGAAGGAGAGGTCACAGTGAGCTTCAAGAACGACATAAATTTGAATGATTTCTATAAGCCTGATAAGTTAGTTGTTGCTGCTACCGAAGAATCGACTAGCTGGAAGAGAAGGAAGGTGGGAAATCTGAAGCTCCAAACCACATTCTCATTCAAATATATGGTTTCAAAGAATTGTGGTTCAAAGGAGGAAGATGAGGATTTGTTCAACAAACAAAACCCCAAAGTTATGTTACAAAAACCAGAACTAATGTTTTCTCCAACTTCCTCTGCCCAGCTTGATTTAGCAACAATAAAGCTTCAGAAAGTTTACAAGAGTTACAGGATTAGAAGAAATCTGGCTGATTGTGCAGTTGTTTGCGAGGAGCTATGGTTTGCTCAAAAGTGGAAGGATTCAGTGATTACTGCTAACAGGTGCTTCATATCCCATTGTGACGATAAATCAGAAACAGCTATTTCTGATATATGGGCAAAGGCTAGGATGATGGCTGCTAAGgtgggaaaaggtttgtccaaagatgataaggcacagaaattagcactaaggcactggctagaagctATTGATCCCCGTCATCGTTATGGGCACAATCTTCATTTCTACTATGAAGTCTGGTTTCATAGCTTGAGTTACCAACCTTTTTTCTACTGGTTGGATGTTGGAGATGGCAAAAAAGTAAATCTTAAAACATGTCCTAGAAGCCAATTGCAGATGCAATGCATAAAGTACCTTGGACCCAAAGAGAGGGAAGCATATGAAGTGATTGTGGAGGGAGGCAGGCTTGTTTATAAACAGAGCCAGAAACTTGTACACACTACTGAAGAATCTAAGTGGATTTTTGTCCTTAGCTCATCTAGAATTTTGTACGTTGGACAAAAGAATAAAGGCCAATTTCAACACTCTAGTTTTCTAGCTGGTGGTGCTACCATTGCATCTGGAAGATTGGTTGCCCAAAATGGAGTTCTTCACGCTATATGGCCCTATAGTGGCCACTACCGTCCAACAGAGAAGAATTTTATGGAATTCATTTGCTTCTTGGAGGAACACAAAGTGGATATGACAAATGTAAAGAAGGATCCAATTGATGATGATGTCCCTCCTTCTAAACCTCTAAATGAAGAGCTGCCATTTGGGTACATAGAAGGTTCAGTTGAAGAAAACAAGCCAATGTCAAACAAATGGGCAACTGGATTTGGTCCTAGGATTGCTTGTGTGAGAGAGTATGCAGACAAATTCCAAGTTCAAGCACTTGAACAACTCAATCTTTCACCAAGAGTCAACAATGCGACATTTGCAGGCAAAGCACCCATTCCCTCTCCAAGGCCTAGCACAAAACATTTGTCACCTAGGCTTGTCAACATGGGACTTCCTAGCCCAATGCCCTCTTTAGGGTTTATGGACATTCAAGTTCATGGGCACTGCTTTTTCGTTTTAGCATTTAAATTTGGACAGTTGGTACATAATACAAGATGA 2493 0.3602 MRVHHKNLTSLIGYCNEGTNKGLIYEYMANGNLQEHLSGKRSKTKFFSWEDRLRIAVDAASGLEYLQNGCKPPIFHRDIKSTNILLNEHFQAKLSDFGLSKIIPSEWGTHVSTVIAGTPGYLDPEYYTTNRLTEKSDVYSFGVVLLEIITSKPVITKNQEKTHISEWVKSLVAKGDIKAIVDSRLDGEFDSNSVWKVVEIAMASVSPNPNNRPIISEIVTELKESLAMELGRTKYSSADTRDSIKPVTVNLNTEFIPQARIKRKLKNQHSSEQNSFTFGLNLLFAQLHSLEVLISPSQVFSSVSSRSRTIKLPNASSKLVQYKREPDILLLPGMGISARSKEGEVTVSFKNDINLNDFYKPDKLVVAATEESTSWKRRKVGNLKLQTTFSFKYMVSKNCGSKEEDEDLFNKQNPKVMLQKPELMFSPTSSAQLDLATIKLQKVYKSYRIRRNLADCAVVCEELWFAQKWKDSVITANRCFISHCDDKSETAISDIWAKARMMAAKVGKGLSKDDKAQKLALRHWLEAIDPRHRYGHNLHFYYEVWFHSLSYQPFFYWLDVGDGKKVNLKTCPRSQLQMQCIKYLGPKEREAYEVIVEGGRLVYKQSQKLVHTTEESKWIFVLSSSRILYVGQKNKGQFQHSSFLAGGATIASGRLVAQNGVLHAIWPYSGHYRPTEKNFMEFICFLEEHKVDMTNVKKDPIDDDVPPSKPLNEELPFGYIEGSVEENKPMSNKWATGFGPRIACVREYADKFQVQALEQLNLSPRVNNATFAGKAPIPSPRPSTKHLSPRLVNMGLPSPMPSLGFMDIQVHGHCFFVLAFKFGQLVHNTR 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00279 830 Gene3D Phosphorylase Kinase; domain 1 1 28 - -
Cca10g00279 830 Gene3D Transferase(Phosphotransferase) domain 1 29 244 - -
Cca10g00279 830 PANTHER CALMODULIN-BINDING FAMILY PROTEIN 332 795 - -
Cca10g00279 830 Pfam Protein tyrosine and serine/threonine kinase 2 222 IPR001245 GO:0004672|GO:0006468
Cca10g00279 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 74 86 IPR008271 GO:0004672|GO:0006468
Cca10g00279 830 PANTHER IQ DOMAIN-CONTAINING PROTEIN IQM3 332 795 IPR044159 -
Cca10g00279 830 SUPERFAMILY Protein kinase-like (PK-like) 2 222 IPR011009 -
Cca10g00279 830 SMART serkin_6 1 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00279 830 ProSiteProfiles Protein kinase domain profile. 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00279 Cca-Chr10 3025901 3037024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00279 1 260 Receptor kinase-like Gene Family AT1G51800 59.160 4.08e-100 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Cca10g00279 PK_Tyr_Ser-Thr 1.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00279 - - gmx:100786055 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00279 10 3025901 3037024 Cca10g00279 10 3025901 3037024 ECH
Cca11g00346 11 4484540 4488367 Cca10g00279 10 3025901 3037024 PCT