Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00276 ATGGATAATTATTACCTTTCTCAACACTCCCAATTCGAATCTGAGACTGACGCCTACAATGCTGATGTCAATGGCGATCACGCTAAGCCTTCTTTCAATCGTCGCGATTCCTCTTCAGGAAAACTCTTCGTTGGAGGCATTTCTTGGGAGACTTCTCAAGAGTCATTTTTTAATTACTTCAGCAAATATGGAGAAGTAACAGATTCAGTGATAATGACGAATAAACTTTCTGGAAGGCCACGTGGGTTTGGCTTTGTAACATTTGCCGATTCAGCTGTTGCAGATGAAGTTTTGGCACAAGAACATACCATTGATGGCAGAGTGGTTGAAGTGAAGAGGACAGTCCCTAGGGAGGACATGGAAGTTATTGGAGTATTAAAAACAAAGAAGATATTTGTTGGGGGAATACCCCAGTTTTTCGCTGATGATGATTTGAAGGAATACTTTTCACCTTATGGAGATGTTATTGACTGCCAAATCATGCTAGATCACAATAGTGGGCGATCTAGAGGCTTTGGATTTGTCACTTTTGACAATGAAGATTCAGTTGATAAGGTTTTTTCAGTGGGGAAAATACATGAAATTGGAGGCAAGCAGGTTGAGATTAAGAGAGCTGAGCCCAAAAGATCTGCAGTTGATAACAGCAGCAACACCTCACGAAAATCATATGGTGGTTTTGGCAATGGAATGGATGGATATGGCGGGAATAGTTCTAGAAATCGCAATCATGGAAAAAGAGGTGGACAGTATTCAGATTCTGGAATGAACGGAGCATATAACCATTTTGAGGGGAGCTTTAATGGAAATGCTGCCACTGTTTATGGTGGCTATTGTGGATATGGTTATGGATTTGGATATGGTGGGCCAATGTATTGCTTTGGCGGTTATGGAGTCAATTCATATGGTAATCCTATGGGTTATGGTGGCATTGCTTCCTATGGAGATGGTAATGCATATGGAAGAACTGGTAATTTCAATCGCACTGGTGGCTATGACAGTGGCAAAGTGGCTGAGAAGGATGATGGTCCTACTTCTGGAAGGTACCATCCTTACTGGAAGTGA 1062 0.4171 MDNYYLSQHSQFESETDAYNADVNGDHAKPSFNRRDSSSGKLFVGGISWETSQESFFNYFSKYGEVTDSVIMTNKLSGRPRGFGFVTFADSAVADEVLAQEHTIDGRVVEVKRTVPREDMEVIGVLKTKKIFVGGIPQFFADDDLKEYFSPYGDVIDCQIMLDHNSGRSRGFGFVTFDNEDSVDKVFSVGKIHEIGGKQVEIKRAEPKRSAVDNSSNTSRKSYGGFGNGMDGYGGNSSRNRNHGKRGGQYSDSGMNGAYNHFEGSFNGNAATVYGGYCGYGYGFGYGGPMYCFGGYGVNSYGNPMGYGGIASYGDGNAYGRTGNFNRTGGYDSGKVAEKDDGPTSGRYHPYWK 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00276 353 MobiDBLite consensus disorder prediction 203 250 - -
Cca10g00276 353 SMART rrm1_1 41 112 IPR000504 GO:0003723
Cca10g00276 353 SMART rrm1_1 130 203 IPR000504 GO:0003723
Cca10g00276 353 Gene3D - 125 266 IPR012677 -
Cca10g00276 353 Gene3D - 38 121 IPR012677 -
Cca10g00276 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 109 IPR000504 GO:0003723
Cca10g00276 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 199 IPR000504 GO:0003723
Cca10g00276 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Cca10g00276 353 MobiDBLite consensus disorder prediction 233 250 - -
Cca10g00276 353 SUPERFAMILY RNA-binding domain, RBD 32 120 IPR035979 GO:0003676
Cca10g00276 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 116 IPR000504 GO:0003723
Cca10g00276 353 SUPERFAMILY RNA-binding domain, RBD 127 212 IPR035979 GO:0003676
Cca10g00276 353 MobiDBLite consensus disorder prediction 330 353 - -
Cca10g00276 353 PANTHER BOULE-RELATED 34 351 IPR037366 GO:0003729
Cca10g00276 353 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 34 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00276 Cca-Chr10 3012824 3016780 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00276 28 200 Eukaryotic Initiation Factors Gene Family AT1G71770 28.421 4.21e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00276 K12741 - gmx:100818080 590.112