Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00271 ATGGCATCGAATTCATCTTCTTCCCAAGATCCTCCTCGAATCAAAtatgatgtcttcatcagcttcagaggcacagacgtacgatgtggttttcttagccatttgaaaaaggaactgcgtcagaagcaggttgatgcctttgtggatgacaggcttgaaggaggggatgagatatcactctctcttgtcaaagccattgaagggtcgcttatttccttggtcatattctccaaagactatgcttcttcaaagtggtgcttggaagagcttgtgaaaatagttgagtgcatggacataaataaacagattgtgattcctgttttctacaacgttgatccatcggacgtacggcaccaaaaggggacttatggagatgcacttgctaagcatgaaagaagtaaaagaaaccaagccaaggtgcaaagttggagatatgctctaaatataactgctaatctttctggatttcattcatccaaatatggggatgaagttgagcttatagaagaaattgtgaaatgtttgtcgaccaagttgaatctcatgtaccaaagtgagttaacagagcttgtaggaattgaagaacggattgcagatttggagtcagtgttgtgcctaggatcgacaatagatgttcgtgtcattggaatttggggcatgggaggtatcggaaagacaactattgcagctgcactatataaccggctttgttttgaatatgaagggtgttgctttatggcaaacataacggaagaatcagagaaacatggaatgatttatctgaagaataaaatcatctctatattacttaaggaaaatgatctacatattggcacacctaatggagttcccccttatgttaagagaaggttggttcgtaaaaaggttttcgttgttcttgatgatataagtgattccgaacaactagaaaatttggtcggagcccttgattggtttggatctggtagcagaatcattgtaacaactagagataagggtgtgctaggaaaaagggtcgacattgtgtatgaggctaaggcattaaaatatgatgaagctattaaacttttcatgatgaatgccttcaaacaaagttgtcttgacttagaatggattgagctatcaagaagggtgattcagtatgctaatggaaatccattagtcttaaaagtgttgggttcttttctttatggcaagagcaagttagaatgggaaagccaattagagaaacttaagaaaatgcctcatgcaaaaattcagaatgtattgagattgacttatgatagacttgatcgagaagagaagaacatatttctatatattgcatgttttctgaaaggatatgaaatacgcaggataatatatctgcttgatgcttgtggtttctcaacaattattgggttaaaagtccttaaagacaaggccctcataattgaagccaagggctctggaatctcaattgtatcaatgcatgacttgatacaagaaatgggttgggagatagttcgagaagaatgcattgaagaccctggaaaacgaacaaggttatgggatcctaatgacattcatctagtattgaaaaataacacgggaactaaagccatcaagagcataactttcaacctctcaaaatttgatgaggtgtgctcaagtcctcaagtgttcgcaaagatgcaacagttaaaatttcttaatttttcccaacattatggcgatgagcaaatcctgtatcttcccaagggcctagaatctttgccgaatgacctaaggctttttcattgggttagttatcctttgaaatccttgcctcaatcattttgtgcagaaaatctcattgagctcaaaatgccgtggagccgagtggaaaaactttgggatgggatccagaatcttgaacatttaaagaaaattgacctcagtaattccaaaaatttgctagaggtcccagatttttcaaaggcctcaaatcttgaagaggtggaactctctgcatgcgaaaacttgcgcaatgttcatccatctattttatctctcaacaagcttgtaaggttgaacttatttgactgcaaagcacttaccagtctcagaagtgattcccatttaagatctctacgtgacctcttcctcggtggttgctcaagactccaggagttttcagtgagttcagagaacatgaaaaaattaattttaacttcaaccgcaatcagtgagttgccctcatcagttggaactctcggaaaacttgaaacattgaTCCTTGATAACTGCAAAAGTCTGAACAATCTTCCAAACAAGGTTGCTTACCTGAGATCACTTCGGTCACTTGATATTTATGGCTGCACACAACTTGATGCATCAAATCTTCATATCCTAGTTAATGGTTTAAGGTCGCTGGAATCATTGAAGTTGGAAGAATGCCGCAACTTATTTGAAATTCCAGATAACATCAACCTCCTATCATCATTGAGGCAGCTGTTGCTAAAAGGAACAGATATTGAAAGAGTTCCTTTAAGCATCAAGCATCTTTCTAATctggaaaagcttgacttaagtaattgcaaaaggctttattctttgccagagcttccactatccataaaagagttttatgccactaactgttcatccttggagaatgtaatgttcactttgagtgctgttgaaatactaaaagcatacaagatgcacacaaaattccaaaactgtgtgaagttggatgaacattcactcagtgctattggagtaaatgctcatgtgaacataaagaaagtggcatatgatcatctctcaacgataggaaccaagtttcttgatggtccagttgatgttatctaccctggaagtaaggttccagagtggttcttgtatagaactacacgggcttcggtaactattgatttctcttctgctccatgttcCAAGATCATGGGATTCATCTTTTGTGTTATTGTTGATAAGTTCCCTTCAAATGACAAGAACTTCATTGGATGTGATTGTTACATGGAAACTGGTATTGGTGAAAGTGTCACACGTGGGCACATGGATACGTGGTCTAGTATACATGCATGTGAATTTTTCTCTGAACATGTGTGTCTGTGGTATGATGAAAAATGTTGTCTGCAAAACAGTGAACGTGAAAGTGAAAACATGGAAGAACTTATGGCCAGTTATAATCCAAAGATTTCATTTGAATTTTTTGCTCAAACTGGAAGTATTTGGGAAAAGCGAAGGGATATTATGATTAAAGGGTGTGGAGTGTGTCCAATATACGACACAGAATATGACAATTTCATTATGCAGATGGAATTGGAGTTGGAATTGACGTTGCAATCTATAGCAACTAAAATGTCAGAAGCATGCTCTAGTAAGGATGAAACCGTCTCTCCAAAACATCAATGCAAGAAACTAAGCTTTCCACCCTATCAAATTGGAACTTGGAAGAGTGCAACACAAGGCTTGAAAGATATATTGTTCCTGTAA 3480 0.0957 MASNSSSSQDPPRIKYDVFISFRGTDVRCGFLSHLKKELRQKQVDAFVDDRLEGGDEISLSLVKAIEGSLISLVIFSKDYASSKWCLEELVKIVECMDINKQIVIPVFYNVDPSDVRHQKGTYGDALAKHERSKRNQAKVQSWRYALNITANLSGFHSSKYGDEVELIEEIVKCLSTKLNLMYQSELTELVGIEERIADLESVLCLGSTIDVRVIGIWGMGGIGKTTIAAALYNRLCFEYEGCCFMANITEESEKHGMIYLKNKIISILLKENDLHIGTPNGVPPYVKRRLVRKKVFVVLDDISDSEQLENLVGALDWFGSGSRIIVTTRDKGVLGKRVDIVYEAKALKYDEAIKLFMMNAFKQSCLDLEWIELSRRVIQYANGNPLVLKVLGSFLYGKSKLEWESQLEKLKKMPHAKIQNVLRLTYDRLDREEKNIFLYIACFLKGYEIRRIIYLLDACGFSTIIGLKVLKDKALIIEAKGSGISIVSMHDLIQEMGWEIVREECIEDPGKRTRLWDPNDIHLVLKNNTGTKAIKSITFNLSKFDEVCSSPQVFAKMQQLKFLNFSQHYGDEQILYLPKGLESLPNDLRLFHWVSYPLKSLPQSFCAENLIELKMPWSRVEKLWDGIQNLEHLKKIDLSNSKNLLEVPDFSKASNLEEVELSACENLRNVHPSILSLNKLVRLNLFDCKALTSLRSDSHLRSLRDLFLGGCSRLQEFSVSSENMKKLILTSTAISELPSSVGTLGKLETLILDNCKSLNNLPNKVAYLRSLRSLDIYGCTQLDASNLHILVNGLRSLESLKLEECRNLFEIPDNINLLSSLRQLLLKGTDIERVPLSIKHLSNLEKLDLSNCKRLYSLPELPLSIKEFYATNCSSLENVMFTLSAVEILKAYKMHTKFQNCVKLDEHSLSAIGVNAHVNIKKVAYDHLSTIGTKFLDGPVDVIYPGSKVPEWFLYRTTRASVTIDFSSAPCSKIMGFIFCVIVDKFPSNDKNFIGCDCYMETGIGESVTRGHMDTWSSIHACEFFSEHVCLWYDEKCCLQNSERESENMEELMASYNPKISFEFFAQTGSIWEKRRDIMIKGCGVCPIYDTEYDNFIMQMELELELTLQSIATKMSEACSSKDETVSPKHQCKKLSFPPYQIGTWKSATQGLKDILFL 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00271 1159 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 11 780 - -
Cca10g00271 1159 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 745 1108 - -
Cca10g00271 1159 Gene3D Ribonuclease Inhibitor 725 912 IPR032675 -
Cca10g00271 1159 Gene3D Ribonuclease Inhibitor 514 724 IPR032675 -
Cca10g00271 1159 SUPERFAMILY L domain-like 490 880 - -
Cca10g00271 1159 Gene3D - 347 431 IPR042197 -
Cca10g00271 1159 ProSiteProfiles TIR domain profile. 14 179 IPR000157 GO:0007165
Cca10g00271 1159 Gene3D - 182 341 IPR027417 -
Cca10g00271 1159 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 156 IPR035897 -
Cca10g00271 1159 Gene3D - 13 181 IPR035897 -
Cca10g00271 1159 Pfam C-JID domain 945 1093 IPR045344 -
Cca10g00271 1159 Pfam Leucine Rich Repeat 610 629 IPR011713 -
Cca10g00271 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 441 IPR027417 -
Cca10g00271 1159 PRINTS Disease resistance protein signature 214 229 - -
Cca10g00271 1159 PRINTS Disease resistance protein signature 290 304 - -
Cca10g00271 1159 PRINTS Disease resistance protein signature 382 396 - -
Cca10g00271 1159 PRINTS Disease resistance protein signature 840 856 - -
Cca10g00271 1159 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 780 IPR044974 GO:0006952
Cca10g00271 1159 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 745 1108 IPR044974 GO:0006952
Cca10g00271 1159 SMART till_3 15 153 IPR000157 GO:0007165
Cca10g00271 1159 Pfam NB-ARC domain 205 419 IPR002182 GO:0043531
Cca10g00271 1159 Pfam TIR domain 15 192 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00271 Cca-Chr10 2993773 2999115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00271 6 855 WRKY Transcription Factor Family AT4G12020 33.218 1.76e-119 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00271 - - ccaj:109805840 2270.35